Variant report

Variant	rs12186633
Chromosome Location	chr5:58687912-58687913
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs11951025	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11959801	0.82[ASW][hapmap];0.88[CEU][hapmap];0.90[TSI][hapmap];0.85[EUR][1000 genomes]
rs11960438	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs12186492	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12187142	0.84[EUR][1000 genomes]
rs12187317	0.82[EUR][1000 genomes]
rs12187338	0.84[EUR][1000 genomes]
rs12188859	0.84[EUR][1000 genomes]
rs13154145	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13159276	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13162275	0.81[EUR][1000 genomes]
rs13184036	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13189127	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13189436	0.83[EUR][1000 genomes]
rs13189942	0.89[CEU][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1348709	0.89[CEU][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs1348710	0.89[CEU][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs1457145	1.00[ASW][hapmap];0.88[CEU][hapmap];0.87[GIH][hapmap];0.90[TSI][hapmap];0.85[EUR][1000 genomes]
rs1541672	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs1541673	0.81[EUR][1000 genomes]
rs1579845	0.81[EUR][1000 genomes]
rs1579846	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1598740	0.85[EUR][1000 genomes]
rs16889805	0.89[CEU][hapmap];1.00[TSI][hapmap]
rs16889810	0.89[CEU][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs17528543	1.00[CHD][hapmap]
rs17528550	1.00[CHD][hapmap]
rs17723785	1.00[CHD][hapmap]
rs17725949	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs17726292	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17780860	1.00[CHD][hapmap]
rs17782969	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1971061	0.81[EUR][1000 genomes]
rs28696115	0.84[EUR][1000 genomes]
rs2898243	0.82[EUR][1000 genomes]
rs34084254	0.81[EUR][1000 genomes]
rs34118182	0.84[EUR][1000 genomes]
rs34433570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34553923	0.85[EUR][1000 genomes]
rs34624326	0.81[EUR][1000 genomes]
rs34733788	0.81[EUR][1000 genomes]
rs34756714	0.85[EUR][1000 genomes]
rs34797165	0.81[EUR][1000 genomes]
rs34852844	0.80[EUR][1000 genomes]
rs34873866	0.81[EUR][1000 genomes]
rs35643183	0.84[EUR][1000 genomes]
rs62357468	0.84[EUR][1000 genomes]
rs62357478	0.81[EUR][1000 genomes]
rs62357500	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62358047	0.85[EUR][1000 genomes]
rs62358055	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6861992	0.89[CEU][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs6869578	0.81[EUR][1000 genomes]
rs6870927	0.81[EUR][1000 genomes]
rs6871410	0.81[EUR][1000 genomes]
rs6872134	0.82[AFR][1000 genomes]
rs6874460	0.89[CEU][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs6874473	0.81[EUR][1000 genomes]
rs6875027	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs6875497	0.81[EUR][1000 genomes]
rs6876934	0.81[EUR][1000 genomes]
rs6879216	0.81[EUR][1000 genomes]
rs6879510	0.81[EUR][1000 genomes]
rs6879949	0.89[CEU][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs6883834	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs6885690	0.81[EUR][1000 genomes]
rs6887017	0.82[ASW][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs6888059	0.84[EUR][1000 genomes]
rs6891589	0.81[EUR][1000 genomes]
rs6892252	0.81[EUR][1000 genomes]
rs6892879	0.81[EUR][1000 genomes]
rs6893655	0.81[EUR][1000 genomes]
rs6893668	0.81[EUR][1000 genomes]
rs6893986	0.81[EUR][1000 genomes]
rs6895550	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs6897015	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs7701455	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs7735228	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs7735376	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs7735572	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs9918215	0.81[EUR][1000 genomes]
rs9918225	0.84[EUR][1000 genomes]
rs9918228	0.89[CEU][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023628	chr5:58557950-58757438	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv917274	chr5:58565291-58814374	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1030716	chr5:58636116-58718362	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1032732	chr5:58637179-58689010	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1022160	chr5:58645805-58689010	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv881705	chr5:58668669-58745872	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1028022	chr5:58673780-58786468	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1034656	chr5:58674724-58755580	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv598253	chr5:58675538-58754510	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1032887	chr5:58678623-58690251	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58672200-58689200	Weak transcription	Fetal Brain Female	brain
2	chr5:58682000-58711800	Weak transcription	Psoas Muscle	Psoas
3	chr5:58683800-58691600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr5:58684400-58697600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr5:58687400-58689800	Weak transcription	Fetal Brain Male	brain
6	chr5:58687600-58688600	Weak transcription	A549	lung

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