Variant report

Variant	rs17528550
Chromosome Location	chr5:58568885-58568886
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10056619	1.00[ASN][1000 genomes]
rs12186633	1.00[CHD][hapmap]
rs16889276	1.00[ASN][1000 genomes]
rs16889495	0.83[TSI][hapmap]
rs16889508	0.83[TSI][hapmap]
rs16889512	0.87[CEU][hapmap];0.88[TSI][hapmap]
rs17528543	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.85[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17723785	0.87[CEU][hapmap];1.00[CHD][hapmap];0.86[TSI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17780860	1.00[CHD][hapmap]
rs2061282	0.86[MEX][hapmap];0.81[TSI][hapmap]
rs244570	0.81[TSI][hapmap]
rs73104881	1.00[ASN][1000 genomes]
rs73106876	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598252	chr5:58487764-58618889	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1023628	chr5:58557950-58757438	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv917274	chr5:58565291-58814374	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58560400-58570000	Weak transcription	Fetal Lung	lung
2	chr5:58561000-58569800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:58561000-58571000	Weak transcription	Left Ventricle	heart
4	chr5:58563000-58569000	Weak transcription	Psoas Muscle	Psoas
5	chr5:58565200-58571000	Weak transcription	Fetal Heart	heart
6	chr5:58567400-58572200	Active TSS	A549	lung
7	chr5:58567600-58570800	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr5:58568200-58572000	Active TSS	Colon Smooth Muscle	Colon
9	chr5:58568200-58572800	Active TSS	Rectal Mucosa Donor 29	rectum
10	chr5:58568200-58572800	Active TSS	Stomach Smooth Muscle	stomach
11	chr5:58568400-58569200	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr5:58568400-58572000	Active TSS	Rectal Smooth Muscle	rectum
13	chr5:58568600-58569000	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
14	chr5:58568600-58569000	Active TSS	Right Atrium	heart
15	chr5:58568600-58569200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr5:58568600-58569200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
17	chr5:58568600-58569200	Active TSS	Colonic Mucosa	Colon
18	chr5:58568600-58569200	Flanking Active TSS	HUVEC	blood vessel
19	chr5:58568600-58570600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr5:58568600-58571600	Active TSS	Fetal Kidney	kidney
21	chr5:58568600-58572200	Active TSS	Fetal Muscle Trunk	muscle
22	chr5:58568600-58572400	Active TSS	Fetal Muscle Leg	muscle
23	chr5:58568600-58572600	Active TSS	Hela-S3	cervix
24	chr5:58568800-58569000	Active TSS	Primary hematopoietic stem cells	blood
25	chr5:58568800-58569000	Flanking Active TSS	Duodenum Mucosa	Duodenum
26	chr5:58568800-58569000	Flanking Active TSS	Fetal Intestine Large	intestine
27	chr5:58568800-58569000	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr5:58568800-58569200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
29	chr5:58568800-58569400	Enhancers	Fetal Intestine Small	intestine
30	chr5:58568800-58569400	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr5:58568800-58569800	Active TSS	Primary hematopoietic stem cells short term culture	blood
32	chr5:58568800-58571600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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