Variant report

Variant	rs12186664
Chromosome Location	chr5:95630225-95630226
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10040098	0.82[CEU][hapmap];0.91[CHB][hapmap]
rs10055431	0.81[AFR][1000 genomes]
rs10515237	0.91[CEU][hapmap]
rs11956194	0.81[ASN][1000 genomes]
rs13159579	0.90[CEU][hapmap]
rs13162665	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13168460	0.90[CEU][hapmap];0.86[CHB][hapmap]
rs13179048	0.87[ASN][1000 genomes]
rs17085593	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17085675	0.91[CEU][hapmap];0.86[CHB][hapmap]
rs2350002	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36101807	0.87[ASN][1000 genomes]
rs3811951	0.91[CEU][hapmap]
rs4869272	0.86[ASN][1000 genomes]
rs4869273	0.88[ASN][1000 genomes]
rs56198733	0.85[ASN][1000 genomes]
rs6234	0.91[CEU][hapmap];0.86[CHB][hapmap]
rs6235	0.91[CEU][hapmap];0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv830410	chr5:95505799-95666310	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95612600-95632400	Weak transcription	Aorta	Aorta
2	chr5:95617400-95637600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr5:95625000-95632400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr5:95627000-95631800	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr5:95627000-95646000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr5:95627200-95646600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr5:95627600-95630600	Enhancers	Liver	Liver
8	chr5:95628200-95631400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr5:95628600-95631000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr5:95628600-95631800	Enhancers	Muscle Satellite Cultured Cells	--
11	chr5:95628800-95630800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr5:95629000-95631000	Weak transcription	Pancreas	Pancrea
13	chr5:95629200-95630600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr5:95629200-95633200	Weak transcription	Adipose Nuclei	Adipose
15	chr5:95629400-95630600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr5:95629600-95631200	Enhancers	HepG2	liver
17	chr5:95629800-95630800	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr5:95629800-95630800	Enhancers	A549	lung
19	chr5:95629800-95631400	Enhancers	Pancreatic Islets	Pancreatic Islet
20	chr5:95629800-95631400	Enhancers	Osteobl	bone
21	chr5:95630000-95630400	Enhancers	Fetal Heart	heart
22	chr5:95630000-95630600	Enhancers	NHDF-Ad	bronchial
23	chr5:95630000-95630800	Enhancers	Fetal Lung	lung
24	chr5:95630000-95630800	Enhancers	HSMMtube	muscle
25	chr5:95630000-95631000	Enhancers	Stomach Smooth Muscle	stomach
26	chr5:95630000-95631200	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr5:95630000-95631200	Enhancers	HSMM	muscle
28	chr5:95630000-95631200	Enhancers	NHLF	lung
29	chr5:95630200-95630800	Enhancers	NH-A	brain

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