Variant report

Variant	rs10055431
Chromosome Location	chr5:95640197-95640198
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10039299	1.00[ASN][1000 genomes]
rs10061609	1.00[ASN][1000 genomes]
rs10476677	1.00[ASN][1000 genomes]
rs10476678	1.00[ASN][1000 genomes]
rs10476679	1.00[ASN][1000 genomes]
rs10476680	1.00[ASN][1000 genomes]
rs12186664	0.81[AFR][1000 genomes]
rs12332412	1.00[ASN][1000 genomes]
rs13361555	1.00[ASN][1000 genomes]
rs13435942	1.00[ASN][1000 genomes]
rs13436661	1.00[ASN][1000 genomes]
rs28585673	1.00[ASN][1000 genomes]
rs28615471	1.00[ASN][1000 genomes]
rs28873541	1.00[ASN][1000 genomes]
rs55687197	1.00[ASN][1000 genomes]
rs58441337	1.00[ASN][1000 genomes]
rs61355142	1.00[ASN][1000 genomes]
rs6865757	1.00[ASN][1000 genomes]
rs6875161	1.00[ASN][1000 genomes]
rs6892752	1.00[ASN][1000 genomes]
rs6897254	1.00[ASN][1000 genomes]
rs73772347	1.00[ASN][1000 genomes]
rs73772387	1.00[ASN][1000 genomes]
rs7711171	1.00[ASN][1000 genomes]
rs7725103	1.00[ASN][1000 genomes]
rs7725510	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv830410	chr5:95505799-95666310	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95627000-95646000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr5:95627200-95646600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:95634000-95656400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr5:95637800-95652000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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