Variant report
| Variant | rs28873541 |
|---|---|
| Chromosome Location | chr5:95712814-95712815 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10039299 | 1.00[ASN][1000 genomes] |
| rs10055431 | 1.00[ASN][1000 genomes] |
| rs10061609 | 1.00[ASN][1000 genomes] |
| rs10476677 | 1.00[ASN][1000 genomes] |
| rs10476678 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10476679 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10476680 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12332412 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13354570 | 1.00[EUR][1000 genomes] |
| rs13361555 | 1.00[ASN][1000 genomes] |
| rs13435942 | 0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13436661 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28585673 | 0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28615471 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55687197 | 1.00[ASN][1000 genomes] |
| rs58441337 | 1.00[ASN][1000 genomes] |
| rs61355142 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6865757 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6875161 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6892752 | 1.00[ASN][1000 genomes] |
| rs6897254 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73772347 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73772387 | 1.00[ASN][1000 genomes] |
| rs7711171 | 1.00[ASN][1000 genomes] |
| rs7725103 | 1.00[ASN][1000 genomes] |
| rs7725510 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1030444 | chr5:95353620-95995619 | Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv537810 | chr5:95353620-95995619 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 16 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:95710000-95716200 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
| 2 | chr5:95711600-95714800 | Weak transcription | Primary T helper memory cells from peripheral blood 2 | blood |
