Variant report

Variant	rs58441337
Chromosome Location	chr5:95660899-95660900
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10039299	1.00[ASN][1000 genomes]
rs10055431	1.00[ASN][1000 genomes]
rs10061609	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10476677	1.00[ASN][1000 genomes]
rs10476678	1.00[ASN][1000 genomes]
rs10476679	1.00[ASN][1000 genomes]
rs10476680	1.00[ASN][1000 genomes]
rs12332412	1.00[ASN][1000 genomes]
rs13361555	1.00[ASN][1000 genomes]
rs13435942	1.00[ASN][1000 genomes]
rs13436661	1.00[ASN][1000 genomes]
rs28585673	1.00[ASN][1000 genomes]
rs28615471	1.00[ASN][1000 genomes]
rs28873541	1.00[ASN][1000 genomes]
rs55687197	1.00[ASN][1000 genomes]
rs61355142	1.00[ASN][1000 genomes]
rs6865757	1.00[ASN][1000 genomes]
rs6875161	1.00[ASN][1000 genomes]
rs6892752	1.00[ASN][1000 genomes]
rs6897254	1.00[ASN][1000 genomes]
rs73772347	1.00[ASN][1000 genomes]
rs73772387	1.00[ASN][1000 genomes]
rs7711171	1.00[ASN][1000 genomes]
rs7725103	1.00[ASN][1000 genomes]
rs7725510	1.00[ASN][1000 genomes]
rs7730339	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv830410	chr5:95505799-95666310	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95658000-95664800	Weak transcription	HSMM	muscle
2	chr5:95658400-95668600	Weak transcription	Aorta	Aorta
3	chr5:95659000-95666600	Weak transcription	HepG2	liver
4	chr5:95659000-95667600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:95659400-95661000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr5:95659400-95664400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr5:95659600-95661000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr5:95659600-95661000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr5:95659800-95661000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:95659800-95661000	Enhancers	Osteobl	bone
11	chr5:95660000-95661000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr5:95660000-95661000	Enhancers	Muscle Satellite Cultured Cells	--
13	chr5:95660000-95661000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr5:95660000-95661000	Enhancers	Hela-S3	cervix
15	chr5:95660000-95661000	Enhancers	HUVEC	blood vessel
16	chr5:95660000-95661000	Enhancers	NHDF-Ad	bronchial
17	chr5:95660000-95661000	Enhancers	NHEK	skin
18	chr5:95660200-95661000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr5:95660200-95661000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr5:95660200-95661000	Enhancers	NHLF	lung
21	chr5:95660200-95664200	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr5:95660800-95663600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr5:95660800-95666000	Weak transcription	A549	lung

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