Variant report

Variant	rs7730339
Chromosome Location	chr5:95661737-95661738
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10045787	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10061609	0.81[YRI][hapmap]
rs10063744	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10515235	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10866767	0.86[CEU][hapmap];0.84[CHB][hapmap]
rs11741888	0.93[JPT][hapmap]
rs11948972	0.81[CEU][hapmap]
rs13153770	0.92[EUR][1000 genomes]
rs13158163	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1995186	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3811942	0.83[CHB][hapmap];0.94[JPT][hapmap]
rs3922467	0.83[AMR][1000 genomes]
rs4529218	0.85[CEU][hapmap]
rs4637573	0.86[CEU][hapmap];0.84[CHB][hapmap]
rs4869277	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4869278	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4869284	0.80[CEU][hapmap]
rs56376321	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58441337	0.81[AFR][1000 genomes]
rs7710625	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv830410	chr5:95505799-95666310	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95658000-95664800	Weak transcription	HSMM	muscle
2	chr5:95658400-95668600	Weak transcription	Aorta	Aorta
3	chr5:95659000-95666600	Weak transcription	HepG2	liver
4	chr5:95659000-95667600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:95659400-95664400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr5:95660200-95664200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr5:95660800-95663600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr5:95660800-95666000	Weak transcription	A549	lung
9	chr5:95661000-95663400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:95661000-95663600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr5:95661000-95663600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr5:95661000-95663800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr5:95661000-95663800	Weak transcription	Osteobl	bone
14	chr5:95661000-95664000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr5:95661000-95664400	Weak transcription	NHDF-Ad	bronchial
16	chr5:95661000-95665000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr5:95661000-95665000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr5:95661000-95666000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr5:95661000-95666000	Weak transcription	NHLF	lung
20	chr5:95661000-95668400	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr5:95661000-95671600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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