Variant report

Variant	rs7710625
Chromosome Location	chr5:95622637-95622638
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10045787	0.95[EUR][1000 genomes]
rs10063744	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10515235	0.94[EUR][1000 genomes]
rs10866767	0.83[CEU][hapmap];0.89[CHB][hapmap]
rs12522310	0.81[AFR][1000 genomes]
rs13153770	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13158163	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3922467	0.81[AMR][1000 genomes]
rs4529218	0.82[CEU][hapmap];0.82[CHB][hapmap]
rs4637573	0.83[CEU][hapmap];0.89[CHB][hapmap]
rs4869277	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4869278	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56376321	0.93[EUR][1000 genomes]
rs6556914	0.81[AFR][1000 genomes]
rs6864629	0.91[AFR][1000 genomes]
rs6868724	0.91[AFR][1000 genomes]
rs7730339	0.95[EUR][1000 genomes]
rs7733672	0.97[YRI][hapmap];0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv830410	chr5:95505799-95666310	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95612600-95632400	Weak transcription	Aorta	Aorta
2	chr5:95613000-95623800	Weak transcription	HSMM	muscle
3	chr5:95616400-95623000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr5:95617400-95625200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr5:95617400-95628600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr5:95617400-95637600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr5:95617800-95628400	Weak transcription	NHEK	skin
8	chr5:95619800-95623800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr5:95620400-95623600	Weak transcription	HMEC	breast
10	chr5:95620800-95623400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:95621200-95623200	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr5:95621200-95623200	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr5:95621200-95624000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr5:95621400-95623000	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr5:95621400-95623200	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr5:95621400-95623800	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr5:95621400-95623800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr5:95621600-95623000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr5:95622400-95623000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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