Variant report

Variant	rs10045787
Chromosome Location	chr5:95667674-95667675
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:95667042..95669189-chr5:95670248..95672973,2	MCF-7	breast:
2	chr5:95667525..95669121-chr5:95669987..95672892,2	MCF-7	breast:
3	chr5:95666674..95669370-chr5:95671185..95673260,2	K562	blood:
4	chr5:95650274..95652042-chr5:95666780..95669521,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10061609	0.88[YRI][hapmap];0.81[AFR][1000 genomes]
rs10063744	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10515235	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10866767	0.82[CEU][hapmap];0.83[CHB][hapmap]
rs11741888	0.83[CHB][hapmap];0.93[JPT][hapmap]
rs13153770	0.92[EUR][1000 genomes]
rs13158163	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1995186	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3811942	0.83[CHB][hapmap];0.94[JPT][hapmap];0.82[TSI][hapmap]
rs4529218	0.82[CEU][hapmap];0.86[MEX][hapmap]
rs4637573	0.82[CEU][hapmap];0.83[CHB][hapmap]
rs4869277	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4869278	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56376321	0.80[AFR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7710625	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[EUR][1000 genomes]
rs7730339	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10045787	FAM172A	cis	parietal	SCAN

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95658400-95668600	Weak transcription	Aorta	Aorta
2	chr5:95661000-95668400	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr5:95661000-95671600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:95663600-95668200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr5:95663800-95667800	Enhancers	Osteobl	bone
6	chr5:95663800-95668000	Enhancers	Muscle Satellite Cultured Cells	--
7	chr5:95663800-95671400	Weak transcription	GM12878-XiMat	blood
8	chr5:95664000-95668000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr5:95664200-95668200	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr5:95665000-95667800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr5:95665000-95668000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr5:95665400-95668400	Weak transcription	HSMMtube	muscle
13	chr5:95665400-95668600	Weak transcription	Left Ventricle	heart
14	chr5:95665400-95671800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr5:95666000-95667800	Enhancers	NHLF	lung
16	chr5:95666000-95668000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr5:95666200-95668000	Enhancers	Liver	Liver
18	chr5:95666200-95671200	Weak transcription	NHEK	skin
19	chr5:95666400-95667800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr5:95666400-95668000	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr5:95666600-95667800	Enhancers	Hela-S3	cervix
22	chr5:95666600-95668000	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr5:95666600-95668800	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr5:95666600-95669400	Enhancers	Fetal Intestine Large	intestine
25	chr5:95666600-95669400	Enhancers	HepG2	liver
26	chr5:95666800-95667800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr5:95666800-95668200	Enhancers	Primary neutrophils fromperipheralblood	blood
28	chr5:95666800-95668200	Weak transcription	Right Atrium	heart
29	chr5:95666800-95669200	Enhancers	Stomach Mucosa	stomach
30	chr5:95666800-95671200	Weak transcription	HSMM	muscle
31	chr5:95667000-95667800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr5:95667000-95667800	Enhancers	Gastric	stomach
33	chr5:95667000-95668400	Enhancers	Pancreas	Pancrea
34	chr5:95667000-95668600	Enhancers	Rectal Mucosa Donor 29	rectum
35	chr5:95667000-95669000	Enhancers	Duodenum Mucosa	Duodenum
36	chr5:95667000-95669400	Enhancers	Fetal Intestine Small	intestine
37	chr5:95667200-95667800	Enhancers	Placenta Amnion	Placenta Amnion
38	chr5:95667200-95668800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr5:95667200-95671600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr5:95667200-95671600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr5:95667200-95671800	Weak transcription	Adipose Nuclei	Adipose
42	chr5:95667200-95672000	Weak transcription	Brain Substantia Nigra	brain
43	chr5:95667200-95672000	Weak transcription	Fetal Kidney	kidney
44	chr5:95667200-95674200	Weak transcription	Small Intestine	intestine
45	chr5:95667400-95668000	Enhancers	Fetal Lung	lung
46	chr5:95667400-95669200	Enhancers	Fetal Heart	heart
47	chr5:95667400-95671000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr5:95667400-95671600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr5:95667400-95671600	Weak transcription	NHDF-Ad	bronchial
50	chr5:95667600-95668000	Enhancers	Monocytes-CD14+_RO01746	blood

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