Variant report

Variant	rs13158163
Chromosome Location	chr5:95626870-95626871
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10045787	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10063744	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10515235	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10866767	0.82[CEU][hapmap];0.88[CHB][hapmap]
rs11948972	0.86[MEX][hapmap]
rs11959068	0.82[AMR][1000 genomes]
rs13153770	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3811942	0.80[MEX][hapmap]
rs3922467	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs4288139	0.83[AFR][1000 genomes]
rs4336380	0.83[AFR][1000 genomes]
rs4529218	0.82[CEU][hapmap];0.82[CHB][hapmap];0.93[MEX][hapmap]
rs4637573	0.82[CEU][hapmap];0.88[CHB][hapmap];0.83[JPT][hapmap]
rs4869277	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4869278	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56376321	0.93[EUR][1000 genomes]
rs6556913	0.89[AFR][1000 genomes]
rs6899303	0.82[AFR][1000 genomes]
rs7444135	0.81[AMR][1000 genomes]
rs7710625	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7730339	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv830410	chr5:95505799-95666310	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs13158163	ANKRD32	cis	parietal	SCAN
rs13158163	FAM172A	cis	parietal	SCAN

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95612600-95632400	Weak transcription	Aorta	Aorta
2	chr5:95617400-95628600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr5:95617400-95637600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr5:95617800-95628400	Weak transcription	NHEK	skin
5	chr5:95624600-95628600	Weak transcription	HepG2	liver
6	chr5:95624600-95629800	Weak transcription	A549	lung
7	chr5:95624800-95628400	Weak transcription	Adipose Nuclei	Adipose
8	chr5:95624800-95629800	Weak transcription	Osteobl	bone
9	chr5:95625000-95628200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:95625000-95632400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr5:95625200-95627000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr5:95625600-95629400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr5:95626000-95628600	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr5:95626200-95627000	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr5:95626400-95627200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr5:95626600-95627400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr5:95626600-95628400	Weak transcription	Stomach Smooth Muscle	stomach
18	chr5:95626600-95628800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr5:95626800-95630000	Weak transcription	Fetal Lung	lung

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