Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10045787	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10063744	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10065122	0.84[AFR][1000 genomes]
rs10515235	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10866767	0.86[CEU][hapmap];0.88[CHB][hapmap];0.95[YRI][hapmap];0.81[AMR][1000 genomes]
rs11948972	0.81[CEU][hapmap]
rs11959068	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs13153770	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13158163	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3922467	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4288139	0.88[AFR][1000 genomes]
rs4305653	0.80[YRI][hapmap]
rs4336380	0.88[AFR][1000 genomes]
rs4529218	0.85[CEU][hapmap];0.82[CHB][hapmap];0.89[JPT][hapmap]
rs4637573	0.86[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs4869277	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56376321	0.92[EUR][1000 genomes]
rs6556913	0.80[AFR][1000 genomes]
rs7444135	0.83[AMR][1000 genomes]
rs7710625	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7730339	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv830410	chr5:95505799-95666310	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95612600-95632400	Weak transcription	Aorta	Aorta
2	chr5:95613000-95623800	Weak transcription	HSMM	muscle
3	chr5:95614200-95617200	Weak transcription	Esophagus	oesophagus
4	chr5:95614400-95617400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:95614800-95617400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr5:95614800-95617400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr5:95615400-95616600	Enhancers	NH-A	brain
8	chr5:95615400-95617200	Enhancers	Muscle Satellite Cultured Cells	--
9	chr5:95615600-95616800	Enhancers	A549	lung
10	chr5:95615600-95617400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr5:95615800-95616800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr5:95616000-95617400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr5:95616000-95618000	Enhancers	HMEC	breast
14	chr5:95616200-95617600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr5:95616200-95617600	Enhancers	NHDF-Ad	bronchial
16	chr5:95616400-95617200	Enhancers	GM12878-XiMat	blood
17	chr5:95616400-95617800	Enhancers	NHEK	skin
18	chr5:95616400-95623000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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