Variant report

Variant	rs10515235
Chromosome Location	chr5:95659056-95659057
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10045787	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10063744	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10866767	0.82[CEU][hapmap];0.83[CHB][hapmap]
rs11135457	1.00[YRI][hapmap]
rs11741888	0.83[CHB][hapmap];0.93[JPT][hapmap]
rs11743265	1.00[YRI][hapmap]
rs11747615	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11948972	0.93[MEX][hapmap];1.00[YRI][hapmap]
rs13153770	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13158163	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13181198	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3792744	1.00[YRI][hapmap]
rs3811942	0.83[CHB][hapmap];0.94[JPT][hapmap];0.86[MEX][hapmap];0.81[TSI][hapmap]
rs4529218	0.82[CEU][hapmap];0.86[MEX][hapmap]
rs4637573	0.82[CEU][hapmap];0.83[CHB][hapmap]
rs4869277	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4869278	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4869284	1.00[YRI][hapmap]
rs56376321	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7710625	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[EUR][1000 genomes]
rs7730339	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv830410	chr5:95505799-95666310	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10515235	ANKRD32	cis	parietal	SCAN
rs10515235	FAM172A	cis	parietal	SCAN

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95657600-95659600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:95657600-95660000	Weak transcription	Hela-S3	cervix
3	chr5:95657600-95660000	Weak transcription	NHEK	skin
4	chr5:95657800-95660800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr5:95658000-95659800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:95658000-95659800	Weak transcription	Osteobl	bone
7	chr5:95658000-95660000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:95658000-95660000	Weak transcription	HMEC	breast
9	chr5:95658000-95660200	Weak transcription	NHLF	lung
10	chr5:95658000-95664800	Weak transcription	HSMM	muscle
11	chr5:95658200-95659400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr5:95658200-95660000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr5:95658200-95660000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr5:95658200-95660000	Weak transcription	NHDF-Ad	bronchial
15	chr5:95658200-95660200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr5:95658200-95660200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr5:95658400-95668600	Weak transcription	Aorta	Aorta
18	chr5:95658800-95659600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr5:95659000-95659400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr5:95659000-95666600	Weak transcription	HepG2	liver
21	chr5:95659000-95667600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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