Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10515235	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10866767	0.86[EUR][1000 genomes]
rs11135457	0.88[EUR][1000 genomes]
rs11741888	0.87[EUR][1000 genomes]
rs11743265	0.80[EUR][1000 genomes]
rs11948972	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11959068	0.86[EUR][1000 genomes]
rs12659143	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13153770	0.91[AMR][1000 genomes]
rs13178392	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13181198	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1995186	0.92[EUR][1000 genomes]
rs34023054	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34639000	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34713740	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34973883	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3792744	0.80[EUR][1000 genomes]
rs3811942	0.87[EUR][1000 genomes]
rs3922467	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4424016	0.86[EUR][1000 genomes]
rs4529218	0.86[EUR][1000 genomes]
rs4637573	0.86[EUR][1000 genomes]
rs4869276	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4869284	0.80[EUR][1000 genomes]
rs62367170	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7444135	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv830410	chr5:95505799-95666310	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95627000-95646000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr5:95627200-95646600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:95634000-95656400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr5:95637800-95652000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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