Variant report

Variant	rs3922467
Chromosome Location	chr5:95613023-95613024
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10052354	0.80[AFR][1000 genomes]
rs10063744	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs10065122	0.87[AFR][1000 genomes]
rs10074626	0.80[AFR][1000 genomes]
rs10476546	0.91[CEU][hapmap]
rs10866767	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11135450	0.83[CEU][hapmap]
rs11135457	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs11741888	0.82[CEU][hapmap];0.82[CHB][hapmap];0.82[EUR][1000 genomes]
rs11743265	0.81[CEU][hapmap]
rs11747615	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11948972	0.95[CEU][hapmap];0.92[EUR][1000 genomes]
rs11959068	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12054709	0.80[AFR][1000 genomes]
rs12659143	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13158163	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs13178392	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13181198	0.88[EUR][1000 genomes]
rs1995186	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34023054	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34639000	0.90[EUR][1000 genomes]
rs34713740	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34973883	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3792744	0.82[CEU][hapmap]
rs3811942	0.81[CEU][hapmap];0.87[CHB][hapmap];0.82[EUR][1000 genomes]
rs4288139	0.88[AFR][1000 genomes]
rs4336380	0.88[AFR][1000 genomes]
rs4424016	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4529218	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4637573	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4869276	0.91[EUR][1000 genomes]
rs4869277	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4869278	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4869284	0.85[CEU][hapmap]
rs62367170	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6556913	0.80[AFR][1000 genomes]
rs6866846	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6882897	0.80[AFR][1000 genomes]
rs7444135	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7710625	0.83[CEU][hapmap];0.89[CHB][hapmap];0.81[AMR][1000 genomes]
rs7730339	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv830410	chr5:95505799-95666310	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95595400-95614800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:95607200-95614000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:95611400-95613800	Weak transcription	HepG2	liver
4	chr5:95612600-95632400	Weak transcription	Aorta	Aorta
5	chr5:95613000-95623800	Weak transcription	HSMM	muscle

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