Variant report

Variant	rs7733672
Chromosome Location	chr5:95623244-95623245
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:95297197..95300138-chr5:95621802..95624032,2	K562	blood:
2	chr5:95621284..95624272-chr5:95627637..95629597,2	K562	blood:

Variant related genes	Relation type
ENSG00000118985	Chromatin interaction
ENSG00000251314	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10052354	0.85[ASN][1000 genomes]
rs10065122	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10074626	0.85[ASN][1000 genomes]
rs10476666	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11950062	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12054709	0.83[ASN][1000 genomes]
rs12522310	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1477368	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4288139	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4336380	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4355545	0.84[ASN][1000 genomes]
rs6556913	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6556914	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6864629	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6868247	0.84[ASN][1000 genomes]
rs6868724	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6882897	0.82[ASN][1000 genomes]
rs6893547	0.81[CEU][hapmap]
rs6899303	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7443470	0.83[ASN][1000 genomes]
rs7706771	0.83[ASN][1000 genomes]
rs7710625	0.97[YRI][hapmap];0.87[AFR][1000 genomes]
rs7714951	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7716096	0.81[ASN][1000 genomes]
rs7737206	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv830410	chr5:95505799-95666310	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95612600-95632400	Weak transcription	Aorta	Aorta
2	chr5:95613000-95623800	Weak transcription	HSMM	muscle
3	chr5:95617400-95625200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr5:95617400-95628600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr5:95617400-95637600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr5:95617800-95628400	Weak transcription	NHEK	skin
7	chr5:95619800-95623800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr5:95620400-95623600	Weak transcription	HMEC	breast
9	chr5:95620800-95623400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:95621200-95624000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:95621400-95623800	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr5:95621400-95623800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr5:95622800-95623400	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr5:95622800-95625200	Enhancers	Hela-S3	cervix
15	chr5:95623000-95625000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr5:95623200-95625600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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