Variant report

Variant	rs7706771
Chromosome Location	chr5:95595365-95595366
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:95594080..95595796-chr5:95600071..95601764,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10052354	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10065122	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10074626	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10476663	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10476666	0.83[ASN][1000 genomes]
rs10866767	0.95[YRI][hapmap];0.82[AFR][1000 genomes]
rs11950062	0.83[ASN][1000 genomes]
rs11959068	0.87[AFR][1000 genomes]
rs12054709	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12522310	0.83[ASN][1000 genomes]
rs13163809	0.82[ASN][1000 genomes]
rs13183436	0.85[ASN][1000 genomes]
rs28757605	0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs4077816	0.92[CEU][hapmap]
rs4288139	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4336380	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4355545	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4357059	0.82[AFR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4379224	0.85[CEU][hapmap]
rs4869270	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4869282	0.82[ASN][1000 genomes]
rs6556913	0.83[ASN][1000 genomes]
rs6556914	0.83[ASN][1000 genomes]
rs6864629	0.83[ASN][1000 genomes]
rs6868247	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6868724	0.83[ASN][1000 genomes]
rs6882897	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6899303	0.82[ASN][1000 genomes]
rs7443470	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7714279	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7714951	0.83[ASN][1000 genomes]
rs7716096	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7733672	0.91[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs7737206	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv830410	chr5:95505799-95666310	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95587800-95595400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr5:95588200-95596600	Enhancers	HUVEC	blood vessel
3	chr5:95588400-95596000	Enhancers	Osteobl	bone
4	chr5:95589800-95596800	Enhancers	HSMM	muscle
5	chr5:95590000-95595600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr5:95591200-95595800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:95591400-95596600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr5:95591800-95595600	Enhancers	NHDF-Ad	bronchial
9	chr5:95592400-95595600	Enhancers	NHEK	skin
10	chr5:95592400-95596000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr5:95592400-95596000	Enhancers	NH-A	brain
12	chr5:95592400-95596200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr5:95592400-95596200	Enhancers	HMEC	breast
14	chr5:95592400-95596400	Enhancers	Hela-S3	cervix
15	chr5:95592400-95596600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr5:95592600-95595400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr5:95593200-95596200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr5:95593400-95596600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr5:95593600-95596000	Enhancers	NHLF	lung
20	chr5:95593600-95596400	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr5:95594200-95595400	Enhancers	Fetal Heart	heart
22	chr5:95594200-95595600	Enhancers	Pancreatic Islets	Pancreatic Islet
23	chr5:95594600-95595400	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr5:95594600-95595800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr5:95594600-95596000	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr5:95594600-95596000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr5:95594600-95596000	Enhancers	HSMMtube	muscle
28	chr5:95594600-95596200	Enhancers	HepG2	liver
29	chr5:95594800-95595400	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr5:95594800-95595400	Flanking Active TSS	A549	lung
31	chr5:95594800-95595400	Enhancers	GM12878-XiMat	blood
32	chr5:95594800-95595600	Enhancers	Primary neutrophils fromperipheralblood	blood
33	chr5:95594800-95595600	Enhancers	Liver	Liver
34	chr5:95594800-95596000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
35	chr5:95594800-95596400	Enhancers	Primary B cells from peripheral blood	blood
36	chr5:95595000-95595400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr5:95595000-95595400	Enhancers	Pancreas	Pancrea
38	chr5:95595000-95595400	Enhancers	Psoas Muscle	Psoas
39	chr5:95595000-95595400	Enhancers	Skeletal Muscle Female	skeletal muscle
40	chr5:95595000-95595400	Enhancers	Stomach Mucosa	stomach
41	chr5:95595000-95595400	Enhancers	K562	blood
42	chr5:95595200-95595400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr5:95595200-95595400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr5:95595200-95595400	Enhancers	Aorta	Aorta
45	chr5:95595200-95595600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
46	chr5:95595200-95595800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
47	chr5:95595200-95595800	Enhancers	Primary B cells from cord blood	blood

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