Variant report

Variant	rs28757605
Chromosome Location	chr5:95514956-95514957
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:95514396..95516278-chr5:95516334..95518457,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10052354	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10065122	0.82[ASN][1000 genomes]
rs10074626	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10476663	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12054709	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs13163809	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13183436	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4355545	0.86[ASN][1000 genomes]
rs4357059	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4869270	0.92[AFR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6868247	0.81[AFR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6882897	0.84[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs6883111	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7443470	0.85[ASN][1000 genomes]
rs7706771	0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7714279	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7716096	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758003	chr5:95231706-95540433	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	esv2759355	chr5:95231706-95540433	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	esv2757121	chr5:95304236-95539536	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
5	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
6	nsv882390	chr5:95486940-95591580	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1035022	chr5:95487901-95526796	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv830410	chr5:95505799-95666310	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95508600-95515200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr5:95509000-95515200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr5:95511000-95515600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr5:95511200-95515400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:95512400-95515400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr5:95513200-95515400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr5:95513200-95515400	Enhancers	HMEC	breast
8	chr5:95513200-95522000	Weak transcription	Aorta	Aorta
9	chr5:95513400-95515000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr5:95513600-95515200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr5:95513600-95515200	Weak transcription	NH-A	brain
12	chr5:95513600-95515400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr5:95513600-95532200	Weak transcription	Pancreas	Pancrea
14	chr5:95513800-95515400	Enhancers	NHEK	skin
15	chr5:95513800-95516600	Weak transcription	HepG2	liver
16	chr5:95514000-95515000	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr5:95514000-95515000	Weak transcription	NHDF-Ad	bronchial
18	chr5:95514400-95515200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr5:95514400-95515600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr5:95514600-95515200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr5:95514600-95515200	Weak transcription	NHLF	lung
22	chr5:95514600-95516200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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