Variant report

Variant	rs4355545
Chromosome Location	chr5:95596694-95596695
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:95595479..95598256-chr5:95600946..95602576,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10052354	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10065122	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10074626	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10476663	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10476666	0.84[ASN][1000 genomes]
rs11950062	0.84[ASN][1000 genomes]
rs11959068	0.81[AFR][1000 genomes]
rs12054709	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12522310	0.84[ASN][1000 genomes]
rs13163809	0.81[ASN][1000 genomes]
rs13183436	0.84[ASN][1000 genomes]
rs28757605	0.86[ASN][1000 genomes]
rs4077816	0.92[CEU][hapmap];0.81[TSI][hapmap]
rs4288139	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4336380	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4357059	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4379224	0.92[CEU][hapmap]
rs4424016	0.82[AFR][1000 genomes]
rs4529218	0.89[LWK][hapmap]
rs4637573	0.96[YRI][hapmap];0.85[AFR][1000 genomes]
rs4869270	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4869282	0.83[ASN][1000 genomes]
rs6556913	0.84[ASN][1000 genomes]
rs6556914	0.84[ASN][1000 genomes]
rs6864629	0.84[ASN][1000 genomes]
rs6868247	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6868724	0.84[ASN][1000 genomes]
rs6882897	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6899303	0.83[ASN][1000 genomes]
rs7443470	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7706771	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7714279	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7714951	0.84[ASN][1000 genomes]
rs7716096	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7733672	0.90[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs7737206	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv830410	chr5:95505799-95666310	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95589800-95596800	Enhancers	HSMM	muscle
2	chr5:95595400-95597400	Weak transcription	Psoas Muscle	Psoas
3	chr5:95595400-95598600	Weak transcription	Pancreas	Pancrea
4	chr5:95595400-95598800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr5:95595400-95603800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr5:95595400-95614800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr5:95595600-95601200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr5:95595800-95597800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr5:95596000-95601800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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