Variant report

Variant	rs12187844
Chromosome Location	chr5:120016963-120016964
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10060316	0.82[CEU][hapmap];0.83[YRI][hapmap]
rs11949516	0.93[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1375467	0.93[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1449166	0.92[CEU][hapmap];1.00[CHB][hapmap];0.87[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1449167	0.92[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1551017	0.92[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1551019	0.93[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17146935	0.86[EUR][1000 genomes]
rs17428241	1.00[CHB][hapmap]
rs17429292	0.92[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17429498	0.93[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes]
rs17493781	1.00[CHB][hapmap]
rs1868459	0.85[EUR][1000 genomes]
rs1900885	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1900889	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2011072	0.81[CEU][hapmap];0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2011223	1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2122193	0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4895163	1.00[CHB][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55696210	0.80[EUR][1000 genomes]
rs56031914	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56345223	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62376456	0.81[ASN][1000 genomes]
rs62376457	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62376458	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62377787	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62377788	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62377790	0.82[EUR][1000 genomes]
rs62377791	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62377792	0.87[EUR][1000 genomes]
rs62377809	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73259913	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs985264	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532200	chr5:119317901-120102513	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1031453	chr5:119843593-120393038	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv599602	chr5:119866504-120023393	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv830464	chr5:119950090-120106717	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv599603	chr5:119953529-120317035	Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv949415	chr5:119957645-120459183	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv830465	chr5:119973839-120151853	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1030613	chr5:119980213-120301205	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:119953000-120021800	Weak transcription	HSMMtube	muscle
2	chr5:120007400-120021800	Weak transcription	Fetal Lung	lung
3	chr5:120008000-120021600	Weak transcription	Aorta	Aorta
4	chr5:120011000-120017200	Weak transcription	NHLF	lung
5	chr5:120013000-120017800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:120013400-120019400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr5:120014200-120017800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr5:120014400-120017800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr5:120014400-120017800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr5:120014800-120017600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr5:120015000-120017800	Weak transcription	NH-A	brain
12	chr5:120015000-120018200	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr5:120015200-120017200	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr5:120016000-120017800	Weak transcription	HSMM	muscle
15	chr5:120016000-120020200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr5:120016200-120017800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr5:120016400-120020800	Enhancers	NHDF-Ad	bronchial
18	chr5:120016600-120021000	Enhancers	Osteobl	bone

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