Variant report

Variant	rs73259913
Chromosome Location	chr5:120010498-120010499
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:120009986..120011754-chr5:120014103..120015876,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10060316	0.87[AFR][1000 genomes]
rs11949516	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12187844	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1375467	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1449166	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1449167	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1551017	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1551019	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17146935	0.84[EUR][1000 genomes]
rs17429292	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17429498	0.84[EUR][1000 genomes]
rs1868459	0.83[EUR][1000 genomes]
rs1900885	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1900889	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2011072	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2011223	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2122193	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4895163	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56031914	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56345223	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62376456	0.81[ASN][1000 genomes]
rs62376457	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62376458	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62377787	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62377788	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62377790	0.84[EUR][1000 genomes]
rs62377791	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62377792	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62377809	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs973562	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532200	chr5:119317901-120102513	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1031453	chr5:119843593-120393038	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv599602	chr5:119866504-120023393	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv830464	chr5:119950090-120106717	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv599603	chr5:119953529-120317035	Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv949415	chr5:119957645-120459183	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv830465	chr5:119973839-120151853	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1030613	chr5:119980213-120301205	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:119953000-120021800	Weak transcription	HSMMtube	muscle
2	chr5:119967800-120012800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr5:119985400-120011200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr5:119991000-120013800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr5:119993200-120011400	Weak transcription	Osteobl	bone
6	chr5:120005000-120013000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr5:120005600-120010800	Weak transcription	NHDF-Ad	bronchial
8	chr5:120006200-120012800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr5:120007400-120013800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:120007400-120021800	Weak transcription	Fetal Lung	lung
11	chr5:120008000-120012800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr5:120008000-120021600	Weak transcription	Aorta	Aorta
13	chr5:120008600-120012400	Weak transcription	HSMM	muscle
14	chr5:120009000-120013000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr5:120009200-120014000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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