Variant report

Variant	rs12188070
Chromosome Location	chr5:112575931-112575932
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs10428666	0.89[EUR][1000 genomes]
rs10519343	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10519345	0.95[ASN][1000 genomes]
rs10519346	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11241197	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11740045	0.87[ASN][1000 genomes]
rs11740190	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11740233	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11740318	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11740353	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11740443	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11741794	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11741937	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11743052	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11744606	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11746532	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11746791	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11746821	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11748058	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11748465	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11748503	0.89[EUR][1000 genomes]
rs11748524	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11749864	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12186466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12188069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12188230	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12518849	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12521391	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12522683	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12522862	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12523027	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12523284	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17135454	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17135463	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17135488	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17135506	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17135507	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17135514	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17135515	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17135517	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17135519	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17135520	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17135526	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17135531	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17135534	0.82[AMR][1000 genomes]
rs17135535	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17135543	0.85[ASN][1000 genomes]
rs17135546	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17164185	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1845289	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1850410	0.95[EUR][1000 genomes]
rs1997521	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2091803	0.93[ASN][1000 genomes]
rs2091804	0.93[ASN][1000 genomes]
rs34271294	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4632792	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4705549	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4705806	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4705807	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4705808	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4705809	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4705810	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56294433	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56362568	0.89[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs59107004	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs59222257	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs60087454	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs60437559	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6594695	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6594696	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6594697	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66893265	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs67063423	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs67373655	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs67550282	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs68069850	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6879761	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6887565	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6888602	0.97[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs73244759	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73244767	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73244768	0.93[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs73244769	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73244770	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73244772	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73244779	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs73246604	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73246629	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73246648	0.85[ASN][1000 genomes]
rs73246657	0.80[ASN][1000 genomes]
rs73246677	0.87[ASN][1000 genomes]
rs73246681	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7703865	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7724707	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7724717	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7724936	0.97[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs971370	0.87[ASN][1000 genomes]
rs971371	0.87[ASN][1000 genomes]
rs971373	0.87[ASN][1000 genomes]
rs977997	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv882718	chr5:112519471-112674376	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv882719	chr5:112568212-112706511	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112548400-112581800	Weak transcription	Fetal Kidney	kidney
2	chr5:112557200-112585800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:112569000-112577800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr5:112570200-112576200	Enhancers	Fetal Heart	heart
5	chr5:112570800-112580600	Weak transcription	Fetal Muscle Leg	muscle
6	chr5:112571000-112581400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr5:112571800-112579400	Weak transcription	Esophagus	oesophagus
8	chr5:112572000-112581400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr5:112572200-112576200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:112572400-112580800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr5:112572400-112590400	Weak transcription	Liver	Liver
12	chr5:112572600-112577200	Weak transcription	HMEC	breast
13	chr5:112572600-112585800	Weak transcription	Pancreas	Pancrea
14	chr5:112572800-112578200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr5:112572800-112581800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr5:112573400-112579400	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr5:112573600-112577400	Weak transcription	Psoas Muscle	Psoas
18	chr5:112573800-112577400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr5:112574000-112576400	Weak transcription	Right Atrium	heart
20	chr5:112574000-112576400	Weak transcription	NHEK	skin
21	chr5:112574000-112576800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr5:112574000-112577600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr5:112574000-112580200	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr5:112574000-112580400	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr5:112574200-112578400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr5:112574200-112581000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr5:112574600-112576400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr5:112574600-112578200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr5:112575000-112576600	Enhancers	Right Ventricle	heart
30	chr5:112575000-112576800	Enhancers	Left Ventricle	heart
31	chr5:112575000-112581000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr5:112575000-112581200	Weak transcription	Adipose Nuclei	Adipose
33	chr5:112575200-112576400	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr5:112575200-112579800	Enhancers	Ovary	ovary
35	chr5:112575200-112580200	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr5:112575200-112581400	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr5:112575400-112580600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr5:112575400-112580800	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr5:112575400-112581000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr5:112575400-112581200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr5:112575400-112585400	Weak transcription	Colon Smooth Muscle	Colon
42	chr5:112575600-112581800	Weak transcription	Stomach Smooth Muscle	stomach
43	chr5:112575600-112582000	Weak transcription	Fetal Stomach	stomach

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