Variant report

Variant	rs12188471
Chromosome Location	chr5:30140659-30140660
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12186524	0.84[EUR][1000 genomes]
rs12188709	0.86[EUR][1000 genomes]
rs17592394	0.86[EUR][1000 genomes]
rs17652083	0.85[EUR][1000 genomes]
rs17652137	0.85[EUR][1000 genomes]
rs34208847	0.86[EUR][1000 genomes]
rs3924075	0.84[EUR][1000 genomes]
rs4867254	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56410637	0.86[EUR][1000 genomes]
rs6859904	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6870433	0.86[EUR][1000 genomes]
rs6884693	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72752395	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72754315	0.86[EUR][1000 genomes]
rs72754317	0.86[EUR][1000 genomes]
rs72754323	0.83[EUR][1000 genomes]
rs72754325	0.84[EUR][1000 genomes]
rs72754327	0.84[EUR][1000 genomes]
rs7714947	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881635	chr5:30122190-30371238	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:30137600-30142600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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