Variant report

Variant	rs12189279
Chromosome Location	chr5:89144526-89144527
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10942576	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12186720	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13157033	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13160423	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13171700	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1367377	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1430620	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16868011	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs28374881	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6872347	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6878660	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7711989	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7735113	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830390	chr5:89054602-89236583	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1021142	chr5:89102893-89897826	Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv537804	chr5:89102893-89897826	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:89123800-89145200	Weak transcription	Aorta	Aorta
2	chr5:89140600-89145200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:89140600-89145400	Weak transcription	GM12878-XiMat	blood
4	chr5:89140800-89146000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:89140800-89147800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:89142000-89145600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr5:89142000-89146000	Enhancers	Placenta Amnion	Placenta Amnion
8	chr5:89142200-89145600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr5:89142400-89145400	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr5:89142400-89145600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr5:89142400-89145600	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr5:89142600-89145600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr5:89142600-89145800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr5:89142800-89145600	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr5:89144200-89145400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr5:89144200-89145400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr5:89144200-89145400	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr5:89144200-89145400	Weak transcription	Osteobl	bone
19	chr5:89144200-89147800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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