Variant report

Variant	rs16868011
Chromosome Location	chr5:89197681-89197682
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10942576	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12186720	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12189279	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13157033	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13160423	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13171700	0.91[ASN][1000 genomes]
rs1367377	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1430620	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28374881	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6872347	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6878660	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7711989	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7735113	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830390	chr5:89054602-89236583	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1021142	chr5:89102893-89897826	Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv537804	chr5:89102893-89897826	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	esv1803359	chr5:89174784-89197681	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:89192400-89197800	Weak transcription	Psoas Muscle	Psoas
2	chr5:89196800-89197800	Enhancers	Fetal Brain Male	brain
3	chr5:89196800-89197800	Weak transcription	NHDF-Ad	bronchial
4	chr5:89196800-89198400	Enhancers	Fetal Brain Female	brain
5	chr5:89196800-89198400	Enhancers	Rectal Smooth Muscle	rectum
6	chr5:89197200-89197800	Enhancers	Colon Smooth Muscle	Colon
7	chr5:89197200-89198200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr5:89197200-89198600	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr5:89197600-89198000	Flanking Active TSS	Stomach Smooth Muscle	stomach
10	chr5:89197600-89198200	Enhancers	Ovary	ovary
11	chr5:89197600-89198200	Active TSS	Skeletal Muscle Male	skeletal muscle
12	chr5:89197600-89199200	Active TSS	Skeletal Muscle Female	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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