Variant report

Variant	rs12190368
Chromosome Location	chr6:163580885-163580886
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:163579439..163581257-chr6:163591298..163592935,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1033578	1.00[ASN][1000 genomes]
rs1033579	1.00[ASN][1000 genomes]
rs10455920	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10945875	0.92[EUR][1000 genomes]
rs10945876	0.91[EUR][1000 genomes]
rs11964879	1.00[ASN][1000 genomes]
rs12190791	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12197200	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12205424	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12209874	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12210010	1.00[ASN][1000 genomes]
rs16894498	1.00[ASN][1000 genomes]
rs17381249	1.00[ASN][1000 genomes]
rs2025343	1.00[ASN][1000 genomes]
rs57010913	1.00[ASN][1000 genomes]
rs57444816	1.00[ASN][1000 genomes]
rs6455866	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6908473	1.00[ASN][1000 genomes]
rs6909176	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6917102	1.00[ASN][1000 genomes]
rs6921357	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6922725	1.00[ASN][1000 genomes]
rs6924563	1.00[ASN][1000 genomes]
rs6932546	0.94[EUR][1000 genomes]
rs73023162	1.00[ASN][1000 genomes]
rs73593799	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7740935	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917926	chr6:162646457-163609259	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1026490	chr6:163133433-163705708	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv869286	chr6:163146342-163697445	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv916587	chr6:163337791-163606120	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv2762628	chr6:163572148-163620903	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163570400-163590400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:163574000-163583000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr6:163574000-163583200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr6:163574000-163586200	Weak transcription	Fetal Brain Female	brain
5	chr6:163576400-163583800	Weak transcription	Fetal Brain Male	brain
6	chr6:163577800-163581000	Enhancers	Fetal Heart	heart
7	chr6:163578600-163583800	Weak transcription	Left Ventricle	heart
8	chr6:163580000-163583000	Weak transcription	Brain Anterior Caudate	brain
9	chr6:163580800-163581000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:163580800-163581000	Enhancers	Right Ventricle	heart

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