Variant report

Variant	rs12210010
Chromosome Location	chr6:163642626-163642627
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1033578	1.00[ASN][1000 genomes]
rs1033579	1.00[ASN][1000 genomes]
rs10455920	1.00[ASN][1000 genomes]
rs11964879	1.00[ASN][1000 genomes]
rs12190368	1.00[ASN][1000 genomes]
rs12190791	1.00[ASN][1000 genomes]
rs12197200	1.00[ASN][1000 genomes]
rs12205424	1.00[ASN][1000 genomes]
rs12209874	1.00[ASN][1000 genomes]
rs16894498	1.00[ASN][1000 genomes]
rs17381249	1.00[ASN][1000 genomes]
rs2025343	1.00[ASN][1000 genomes]
rs57010913	1.00[ASN][1000 genomes]
rs57444816	1.00[ASN][1000 genomes]
rs6455866	1.00[ASN][1000 genomes]
rs6908473	1.00[ASN][1000 genomes]
rs6909176	1.00[ASN][1000 genomes]
rs6917102	1.00[ASN][1000 genomes]
rs6921357	1.00[ASN][1000 genomes]
rs6922725	1.00[ASN][1000 genomes]
rs6924563	1.00[ASN][1000 genomes]
rs73593799	1.00[ASN][1000 genomes]
rs7740935	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1026490	chr6:163133433-163705708	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv869286	chr6:163146342-163697445	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1022610	chr6:163591786-163814041	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163641400-163642800	Weak transcription	Right Ventricle	heart
2	chr6:163642200-163651800	Weak transcription	Brain Substantia Nigra	brain
3	chr6:163642400-163642800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:163642600-163644600	Weak transcription	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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