Variant report

Variant	rs12190421
Chromosome Location	chr6:37652843-37652844
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37647992..37650901-chr6:37651489..37653711,2	K562	blood:
2	chr6:37650720..37654671-chr6:37670149..37673658,3	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11758275	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12154114	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12210919	0.92[ASN][1000 genomes]
rs12211370	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56120772	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59744433	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60167914	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73734242	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs910210	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37629600-37659600	Weak transcription	Ovary	ovary
2	chr6:37649000-37656600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:37649800-37656400	Weak transcription	Fetal Brain Female	brain
4	chr6:37649800-37659600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr6:37650000-37656000	Weak transcription	Brain Germinal Matrix	brain
6	chr6:37650000-37656600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr6:37650400-37659200	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr6:37651400-37655600	Weak transcription	Fetal Brain Male	brain
9	chr6:37651400-37655800	Weak transcription	Brain Angular Gyrus	brain
10	chr6:37651400-37655800	Weak transcription	Brain Hippocampus Middle	brain
11	chr6:37651600-37655800	Weak transcription	Primary B cells from peripheral blood	blood
12	chr6:37651800-37657200	Weak transcription	Brain Anterior Caudate	brain
13	chr6:37652000-37659000	Weak transcription	NHLF	lung
14	chr6:37652200-37653400	Enhancers	HSMMtube	muscle
15	chr6:37652200-37654600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:37652200-37659400	Weak transcription	Brain Cingulate Gyrus	brain
17	chr6:37652400-37653000	Enhancers	Muscle Satellite Cultured Cells	--
18	chr6:37652400-37653400	Enhancers	Fetal Muscle Leg	muscle
19	chr6:37652600-37653200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr6:37652600-37663600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr6:37652800-37653400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr6:37652800-37653600	Strong transcription	Fetal Stomach	stomach

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