Variant report

Variant	rs73734242
Chromosome Location	chr6:37648790-37648791
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37647992..37650901-chr6:37651489..37653711,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11758275	0.81[ASN][1000 genomes]
rs12154114	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12190421	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12210919	0.88[ASN][1000 genomes]
rs12211370	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56120772	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs59744433	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs60167914	0.81[ASN][1000 genomes]
rs910210	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37629600-37659600	Weak transcription	Ovary	ovary
2	chr6:37645200-37651400	Enhancers	Fetal Brain Male	brain
3	chr6:37646000-37649600	Enhancers	Primary B cells from peripheral blood	blood
4	chr6:37646000-37650400	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr6:37646600-37649000	Enhancers	Primary B cells from cord blood	blood
6	chr6:37646600-37649400	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr6:37647000-37649000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:37647000-37649200	Enhancers	Fetal Muscle Leg	muscle
9	chr6:37647200-37648800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr6:37647400-37648800	Enhancers	Psoas Muscle	Psoas
11	chr6:37647400-37649000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:37647400-37649400	Enhancers	Brain Angular Gyrus	brain
13	chr6:37647600-37648800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr6:37647600-37649000	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr6:37647600-37649000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr6:37647600-37649200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:37647600-37649400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:37647800-37649400	Enhancers	Fetal Stomach	stomach
19	chr6:37647800-37649600	Enhancers	Brain Anterior Caudate	brain
20	chr6:37647800-37649800	Enhancers	Fetal Brain Female	brain
21	chr6:37647800-37650000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
22	chr6:37648000-37649000	Enhancers	Colon Smooth Muscle	Colon
23	chr6:37648200-37649000	Enhancers	Rectal Smooth Muscle	rectum
24	chr6:37648200-37649200	Enhancers	Lung	lung
25	chr6:37648400-37649000	Enhancers	GM12878-XiMat	blood
26	chr6:37648400-37649800	Enhancers	Brain Hippocampus Middle	brain
27	chr6:37648400-37650000	Enhancers	Brain Germinal Matrix	brain
28	chr6:37648400-37651400	Weak transcription	Spleen	Spleen
29	chr6:37648400-37652200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr6:37648600-37648800	Enhancers	Stomach Smooth Muscle	stomach
31	chr6:37648600-37649000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
32	chr6:37648600-37649200	Enhancers	Fetal Muscle Trunk	muscle
33	chr6:37648600-37649800	Enhancers	Brain Cingulate Gyrus	brain
34	chr6:37648600-37650000	Enhancers	Brain Substantia Nigra	brain

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