Variant report

Variant	rs12190522
Chromosome Location	chr6:74052755-74052756
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10455272	1.00[JPT][hapmap]
rs10943084	1.00[JPT][hapmap]
rs12191242	1.00[JPT][hapmap]
rs12198600	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12203222	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12215980	1.00[JPT][hapmap]
rs16883518	1.00[JPT][hapmap]
rs16883564	1.00[JPT][hapmap]
rs16883571	1.00[JPT][hapmap]
rs56162141	0.90[ASN][1000 genomes]
rs62440564	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62440565	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62440569	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62440570	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62440579	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	esv3504204	chr6:74049231-74053029	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv830693	chr6:74049342-74216080	Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	esv3504202	chr6:74049631-74052829	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3485783	chr6:74052070-74052830	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv3485784	chr6:74052070-74052830	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74050000-74053600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:74052600-74053200	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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