Variant report

Variant	rs12190529
Chromosome Location	chr6:15339113-15339114
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15334393..15336610-chr6:15336924..15339638,2	MCF-7	breast:
2	chr6:15309030..15310974-chr6:15337189..15339265,2	K562	blood:
3	chr6:15337898..15340460-chr6:15344008..15346254,2	K562	blood:
4	chr6:15337898..15340575-chr6:15344754..15346460,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12204396	1.00[AMR][1000 genomes]
rs12210722	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027010	chr6:15201803-15425629	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1030558	chr6:15234675-15449137	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv538141	chr6:15234675-15509163	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv538142	chr6:15243960-15404893	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv949448	chr6:15279490-15449441	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv1025512	chr6:15291551-15452395	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv538143	chr6:15291551-15452395	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv538144	chr6:15310696-15364984	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15324800-15339800	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr6:15327800-15375800	Weak transcription	Aorta	Aorta
3	chr6:15328000-15340200	Weak transcription	Esophagus	oesophagus
4	chr6:15328000-15342000	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr6:15328200-15340800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr6:15329200-15341000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr6:15329800-15343600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr6:15330000-15340400	Weak transcription	Fetal Intestine Small	intestine
9	chr6:15330600-15340200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr6:15330600-15340400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr6:15330800-15348800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr6:15331200-15339200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr6:15331400-15340800	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr6:15331400-15341600	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr6:15331600-15345400	Weak transcription	Ovary	ovary
16	chr6:15331600-15346000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr6:15331600-15347000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:15331800-15339400	Weak transcription	Dnd41	blood
19	chr6:15331800-15340400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:15331800-15340600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:15331800-15340800	Weak transcription	NHEK	skin
22	chr6:15332000-15355800	Weak transcription	Fetal Muscle Trunk	muscle
23	chr6:15332000-15359400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr6:15332400-15340000	Weak transcription	Small Intestine	intestine
25	chr6:15332800-15341600	Weak transcription	HSMM	muscle
26	chr6:15333000-15341000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr6:15333000-15341600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr6:15333200-15351400	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr6:15333400-15340600	Enhancers	Primary T helper cells PMA-I stimulated	--
30	chr6:15333600-15339600	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr6:15333800-15347600	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr6:15334200-15339200	Enhancers	Primary B cells from cord blood	blood
33	chr6:15334400-15339400	Enhancers	iPS-18 Cell Line	embryonic stem cell
34	chr6:15334800-15339600	Enhancers	Primary B cells from peripheral blood	blood
35	chr6:15334800-15350200	Enhancers	Primary T helper cells fromperipheralblood	blood
36	chr6:15335400-15339600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
37	chr6:15335400-15349800	Enhancers	Fetal Thymus	thymus
38	chr6:15335600-15339200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr6:15335600-15339600	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr6:15335600-15340600	Enhancers	HUES48 Cell Line	embryonic stem cell
41	chr6:15335800-15339400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
42	chr6:15335800-15339800	Enhancers	iPS-20b Cell Line	embryonic stem cell
43	chr6:15336200-15340800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr6:15336800-15339200	Enhancers	H9 Cell Line	embryonic stem cell
45	chr6:15336800-15339600	Enhancers	Primary T cells fromperipheralblood	blood
46	chr6:15337000-15339400	Enhancers	Fetal Lung	lung
47	chr6:15337000-15339400	Enhancers	Right Atrium	heart
48	chr6:15337000-15339800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr6:15337000-15340800	Enhancers	K562	blood
50	chr6:15337200-15339200	Enhancers	Brain Hippocampus Middle	brain

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