Variant report

Variant	rs12210722
Chromosome Location	chr6:15470240-15470241
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15469376..15472303-chr6:15480815..15482387,2	K562	blood:
2	chr6:15469193..15474455-chr6:15475135..15479397,6	K562	blood:
3	chr6:15465292..15467181-chr6:15469081..15471083,2	K562	blood:
4	chr6:15210482..15212890-chr6:15469167..15471491,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12190529	1.00[AMR][1000 genomes]
rs12196958	1.00[AMR][1000 genomes]
rs12204396	1.00[AMR][1000 genomes]
rs12207984	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv538141	chr6:15234675-15509163	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15435800-15487600	Weak transcription	Colonic Mucosa	Colon
2	chr6:15444600-15477400	Weak transcription	Hela-S3	cervix
3	chr6:15445400-15474000	Weak transcription	NH-A	brain
4	chr6:15446600-15479800	Weak transcription	Gastric	stomach
5	chr6:15448200-15479800	Weak transcription	Pancreas	Pancrea
6	chr6:15452400-15475800	Weak transcription	Aorta	Aorta
7	chr6:15453000-15481000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr6:15455400-15475600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:15455400-15475600	Weak transcription	Esophagus	oesophagus
10	chr6:15457000-15480800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr6:15458400-15484200	Weak transcription	Small Intestine	intestine
12	chr6:15458800-15474600	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr6:15460800-15480000	Weak transcription	Stomach Mucosa	stomach
14	chr6:15461200-15472400	Weak transcription	Right Ventricle	heart
15	chr6:15461600-15491000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr6:15463000-15479800	Weak transcription	Fetal Brain Male	brain
17	chr6:15463200-15476600	Weak transcription	Rectal Smooth Muscle	rectum
18	chr6:15463600-15473000	Weak transcription	Osteobl	bone
19	chr6:15463600-15473400	Weak transcription	NHEK	skin
20	chr6:15463600-15473600	Weak transcription	NHDF-Ad	bronchial
21	chr6:15463800-15473600	Weak transcription	Right Atrium	heart
22	chr6:15463800-15476400	Weak transcription	Ovary	ovary
23	chr6:15463800-15479800	Weak transcription	Brain Germinal Matrix	brain
24	chr6:15464400-15474000	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr6:15464400-15474000	Strong transcription	Fetal Thymus	thymus
26	chr6:15464400-15474000	Weak transcription	HSMMtube	muscle
27	chr6:15464800-15474000	Weak transcription	Fetal Heart	heart
28	chr6:15464800-15479800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr6:15465000-15472400	Weak transcription	Psoas Muscle	Psoas
30	chr6:15465600-15480000	Weak transcription	Fetal Brain Female	brain
31	chr6:15466600-15470600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr6:15466600-15472400	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr6:15466600-15475000	Strong transcription	HUES6 Cell Line	embryonic stem cell
34	chr6:15467600-15473400	Weak transcription	Brain Substantia Nigra	brain
35	chr6:15468000-15471800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr6:15468000-15472000	Strong transcription	Primary monocytes fromperipheralblood	blood
37	chr6:15468200-15471800	Strong transcription	HUES48 Cell Line	embryonic stem cell
38	chr6:15468400-15476000	Strong transcription	Primary B cells from cord blood	blood
39	chr6:15468400-15478200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr6:15468600-15470800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr6:15468600-15471200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr6:15468600-15471400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
43	chr6:15468600-15471400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr6:15468600-15471800	Strong transcription	H1 Cell Line	embryonic stem cell
45	chr6:15468600-15471800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr6:15468600-15471800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr6:15468600-15471800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr6:15468600-15472200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
49	chr6:15468600-15472200	Strong transcription	Adipose Nuclei	Adipose
50	chr6:15468600-15472400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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