Variant report

Variant	rs12191432
Chromosome Location	chr6:25618003-25618004
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:25613612..25615259-chr6:25616864..25619327,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10456322	1.00[JPT][hapmap]
rs10456323	1.00[JPT][hapmap]
rs12192331	1.00[JPT][hapmap]
rs12192342	1.00[JPT][hapmap]
rs12195457	1.00[JPT][hapmap]
rs12207791	1.00[JPT][hapmap]
rs12208868	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1410443	1.00[JPT][hapmap]
rs150533	1.00[JPT][hapmap]
rs184202	1.00[JPT][hapmap]
rs1884575	1.00[JPT][hapmap]
rs212927	1.00[JPT][hapmap]
rs212929	1.00[JPT][hapmap]
rs212931	1.00[JPT][hapmap]
rs212932	1.00[JPT][hapmap]
rs212935	1.00[JPT][hapmap]
rs212937	1.00[JPT][hapmap]
rs212939	1.00[JPT][hapmap]
rs212940	1.00[JPT][hapmap]
rs301377	1.00[JPT][hapmap]
rs441472	1.00[JPT][hapmap]
rs453181	1.00[JPT][hapmap]
rs485567	1.00[JPT][hapmap]
rs6902158	1.00[JPT][hapmap]
rs6927384	1.00[JPT][hapmap]
rs6931843	1.00[JPT][hapmap]
rs7742338	1.00[JPT][hapmap]
rs9348685	1.00[JPT][hapmap]
rs9379774	1.00[JPT][hapmap]
rs9461190	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883488	chr6:25592489-25731691	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25572000-25622200	Weak transcription	HSMMtube	muscle
2	chr6:25577200-25624800	Weak transcription	Adipose Nuclei	Adipose
3	chr6:25581200-25622800	Weak transcription	Colonic Mucosa	Colon
4	chr6:25582000-25626800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr6:25582400-25622200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr6:25583600-25623200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr6:25583800-25623200	Weak transcription	Esophagus	oesophagus
8	chr6:25585000-25627000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:25585200-25629400	Weak transcription	Pancreas	Pancrea
10	chr6:25587400-25622400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr6:25589200-25623400	Weak transcription	HMEC	breast
12	chr6:25592400-25625600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:25593600-25618600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:25594200-25629200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr6:25594400-25618200	Weak transcription	Primary hematopoietic stem cells	blood
16	chr6:25594400-25627200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr6:25594600-25627200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr6:25594600-25629600	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr6:25594800-25624600	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr6:25595000-25626800	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr6:25595000-25627000	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr6:25598000-25622800	Weak transcription	Gastric	stomach
23	chr6:25599200-25622800	Weak transcription	Rectal Smooth Muscle	rectum
24	chr6:25599400-25618600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr6:25601000-25619400	Weak transcription	Fetal Stomach	stomach
26	chr6:25601600-25626400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:25602800-25623600	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr6:25603800-25624000	Weak transcription	Fetal Kidney	kidney
29	chr6:25606600-25621000	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr6:25607000-25622000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr6:25608000-25621200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr6:25609400-25627000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr6:25610400-25620400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr6:25610400-25624200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr6:25611000-25622800	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr6:25611200-25619400	Weak transcription	Left Ventricle	heart
37	chr6:25611200-25621000	Weak transcription	Stomach Smooth Muscle	stomach
38	chr6:25611200-25623200	Weak transcription	Lung	lung
39	chr6:25611600-25625200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr6:25611800-25621000	Weak transcription	Fetal Intestine Large	intestine
41	chr6:25611800-25621000	Weak transcription	Fetal Lung	lung
42	chr6:25611800-25623000	Weak transcription	Fetal Thymus	thymus
43	chr6:25612000-25619000	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr6:25612000-25620800	Weak transcription	Thymus	Thymus
45	chr6:25612400-25619200	Weak transcription	Aorta	Aorta
46	chr6:25612400-25623600	Weak transcription	Ovary	ovary
47	chr6:25612600-25619200	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr6:25612600-25621200	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr6:25612800-25620800	Weak transcription	Duodenum Mucosa	Duodenum
50	chr6:25612800-25623400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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