Variant report
| Variant | rs12208868 |
|---|---|
| Chromosome Location | chr6:25657286-25657287 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:25651028..25653725-chr6:25657180..25659322,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000079689 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10456322 | 1.00[JPT][hapmap] |
| rs10456323 | 1.00[JPT][hapmap] |
| rs12191432 | 1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12192331 | 1.00[JPT][hapmap] |
| rs12192342 | 1.00[JPT][hapmap] |
| rs12195457 | 1.00[JPT][hapmap] |
| rs12207791 | 1.00[JPT][hapmap] |
| rs1410443 | 1.00[JPT][hapmap] |
| rs150533 | 1.00[JPT][hapmap] |
| rs184202 | 1.00[JPT][hapmap] |
| rs1884575 | 1.00[JPT][hapmap] |
| rs212927 | 1.00[JPT][hapmap] |
| rs212929 | 1.00[JPT][hapmap] |
| rs212931 | 1.00[JPT][hapmap] |
| rs212932 | 1.00[JPT][hapmap] |
| rs212935 | 1.00[JPT][hapmap] |
| rs212937 | 1.00[JPT][hapmap] |
| rs212939 | 1.00[JPT][hapmap] |
| rs212940 | 1.00[JPT][hapmap] |
| rs301377 | 1.00[JPT][hapmap] |
| rs441472 | 1.00[JPT][hapmap] |
| rs453181 | 1.00[JPT][hapmap] |
| rs485567 | 1.00[JPT][hapmap] |
| rs6902158 | 1.00[JPT][hapmap] |
| rs6927384 | 1.00[JPT][hapmap] |
| rs6931843 | 1.00[JPT][hapmap] |
| rs7742338 | 1.00[JPT][hapmap] |
| rs9348685 | 1.00[JPT][hapmap] |
| rs9379774 | 1.00[JPT][hapmap] |
| rs9461190 | 1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv883488 | chr6:25592489-25731691 | Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv1029920 | chr6:25638507-26585842 | Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 1215 gene(s) | inside rSNPs | diseases |
| 3 | nsv538162 | chr6:25638507-26585842 | Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 1215 gene(s) | inside rSNPs | diseases |
| 4 | nsv427747 | chr6:25641380-25908218 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:25656800-25660600 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
| 2 | chr6:25657000-25657600 | Enhancers | Pancreatic Islets | Pancreatic Islet |
