Variant report

Variant	rs12191760
Chromosome Location	chr6:14944752-14944753
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12173704	0.92[ASN][1000 genomes]
rs12176066	0.92[ASN][1000 genomes]
rs2045222	0.83[ASN][1000 genomes]
rs2045223	0.92[ASN][1000 genomes]
rs371601	0.91[ASN][1000 genomes]
rs409391	0.91[ASN][1000 genomes]
rs4285324	0.92[ASN][1000 genomes]
rs4299834	0.91[ASN][1000 genomes]
rs4515392	0.92[ASN][1000 genomes]
rs4574648	0.91[ASN][1000 genomes]
rs4715937	0.92[ASN][1000 genomes]
rs4715938	0.92[ASN][1000 genomes]
rs6917587	0.92[ASN][1000 genomes]
rs6918362	0.92[ASN][1000 genomes]
rs6922975	0.90[ASN][1000 genomes]
rs6930788	0.92[ASN][1000 genomes]
rs6931541	0.92[ASN][1000 genomes]
rs6942359	0.92[ASN][1000 genomes]
rs9349961	0.88[ASN][1000 genomes]
rs9349962	0.92[ASN][1000 genomes]
rs9370783	0.92[ASN][1000 genomes]
rs9396537	0.92[ASN][1000 genomes]
rs9396538	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv883453	chr6:14926320-15001506	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14933600-14954000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:14933600-14964800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:14933800-14969600	Weak transcription	Right Atrium	heart
4	chr6:14939200-14945000	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr6:14944400-14946400	Enhancers	Fetal Thymus	thymus
6	chr6:14944600-14945400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:14944600-14947200	Enhancers	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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