Variant report

Variant	rs12192774
Chromosome Location	chr6:109822664-109822665
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10456867	0.88[ASN][1000 genomes]
rs10457191	0.81[EUR][1000 genomes]
rs1048197	0.92[EUR][1000 genomes]
rs12190158	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12200776	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12200925	0.90[ASN][1000 genomes]
rs12203098	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12203481	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12204742	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12205941	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12208204	0.87[AFR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12208474	0.81[EUR][1000 genomes]
rs12208785	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12211964	0.81[EUR][1000 genomes]
rs28816813	0.86[ASN][1000 genomes]
rs3757239	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7751929	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109813400-109823000	Weak transcription	HSMM	muscle
2	chr6:109815800-109837200	Weak transcription	Primary B cells from cord blood	blood
3	chr6:109818200-109823400	Weak transcription	HSMMtube	muscle
4	chr6:109818400-109823000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:109818400-109823000	Weak transcription	Primary T cells from cord blood	blood
6	chr6:109818400-109823200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:109819800-109824800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr6:109819800-109828200	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr6:109819800-109828200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr6:109820200-109824600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr6:109820200-109824800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr6:109820400-109824800	Weak transcription	Fetal Kidney	kidney
13	chr6:109822400-109826000	Enhancers	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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