Variant report

Variant	rs12200776
Chromosome Location	chr6:109746342-109746343
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109742336..109749135-chr6:109759459..109767338,11	MCF-7	breast:
2	chr6:109744187..109748407-chr6:109760095..109763715,4	MCF-7	breast:
3	chr6:109744870..109747846-chr6:109748398..109750532,2	K562	blood:
4	chr6:109745752..109748104-chr6:109754053..109756806,2	K562	blood:

Variant related genes	Relation type
ENSG00000239160	Chromatin interaction
ENSG00000135587	Chromatin interaction
ENSG00000185250	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10457191	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1048197	1.00[CEU][hapmap];0.85[CHB][hapmap];0.92[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12190158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12192774	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12203098	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12204742	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12205941	1.00[CEU][hapmap]
rs12208204	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12208474	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12208785	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12211964	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3757239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56211936	0.87[ASN][1000 genomes]
rs752727	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7751929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9791268	1.00[CEU][hapmap]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109707000-109755400	Weak transcription	Fetal Intestine Small	intestine
2	chr6:109721200-109760600	Weak transcription	Fetal Brain Female	brain
3	chr6:109724400-109750400	Weak transcription	Ovary	ovary
4	chr6:109725800-109760800	Weak transcription	Brain Anterior Caudate	brain
5	chr6:109735200-109750200	Weak transcription	Fetal Muscle Leg	muscle
6	chr6:109735600-109750000	Weak transcription	Brain Hippocampus Middle	brain
7	chr6:109736600-109760800	Weak transcription	Brain Angular Gyrus	brain
8	chr6:109737400-109750200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr6:109740400-109754800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr6:109745200-109746400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:109745200-109746400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:109745200-109746400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:109745200-109746600	Enhancers	NHEK	skin
14	chr6:109745200-109747000	Enhancers	Placenta	Placenta
15	chr6:109745400-109746400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:109745400-109746400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:109745400-109746400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr6:109745400-109746400	Enhancers	K562	blood
19	chr6:109745400-109746600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr6:109745400-109746800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:109745600-109746400	Enhancers	NHDF-Ad	bronchial
22	chr6:109745600-109760800	Weak transcription	Gastric	stomach
23	chr6:109745800-109750800	Weak transcription	Left Ventricle	heart
24	chr6:109746000-109750200	Weak transcription	Adipose Nuclei	Adipose
25	chr6:109746000-109753400	Weak transcription	Pancreas	Pancrea
26	chr6:109746200-109746400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr6:109746200-109746600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr6:109746200-109746600	Flanking Active TSS	Osteobl	bone
29	chr6:109746200-109750000	Weak transcription	Stomach Mucosa	stomach

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