Variant report

Variant	rs56211936
Chromosome Location	chr6:109659435-109659436
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109624816..109627658-chr6:109659263..109661556,2	K562	blood:
2	chr6:109656306..109660874-chr6:109662231..109666521,7	MCF-7	breast:
3	chr6:109659415..109661984-chr6:109702237..109705687,4	MCF-7	breast:
4	chr6:109651102..109653530-chr6:109656449..109659654,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000201023	Chromatin interaction
ENSG00000135535	Chromatin interaction
ENSG00000260273	Chromatin interaction
ENSG00000203799	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10457191	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1048197	0.85[ASN][1000 genomes]
rs12190158	0.85[ASN][1000 genomes]
rs12200776	0.87[ASN][1000 genomes]
rs12204742	0.87[ASN][1000 genomes]
rs12208474	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12208785	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12211964	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3757239	0.85[ASN][1000 genomes]
rs752727	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751929	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5435	chr6:109633035-109669127	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109644600-109675200	Weak transcription	Primary T cells from cord blood	blood
2	chr6:109645400-109662400	Weak transcription	Aorta	Aorta
3	chr6:109654000-109669400	Weak transcription	Small Intestine	intestine
4	chr6:109654200-109671000	Weak transcription	Spleen	Spleen
5	chr6:109654200-109675000	Weak transcription	Primary B cells from peripheral blood	blood
6	chr6:109654200-109676200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr6:109654400-109660600	Weak transcription	Fetal Muscle Leg	muscle
8	chr6:109654400-109668800	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr6:109656800-109662600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:109657600-109660600	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr6:109657800-109660400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:109657800-109661000	Weak transcription	Placenta	Placenta
13	chr6:109657800-109662200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr6:109657800-109662200	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr6:109657800-109671000	Weak transcription	Lung	lung
16	chr6:109658000-109661400	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr6:109658200-109661000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr6:109658200-109663600	Weak transcription	Left Ventricle	heart
19	chr6:109658400-109665200	Weak transcription	Fetal Intestine Small	intestine
20	chr6:109658400-109669200	Weak transcription	Liver	Liver
21	chr6:109658600-109661400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:109658600-109662200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr6:109658600-109662200	Weak transcription	Right Ventricle	heart
24	chr6:109658600-109668200	Weak transcription	Colonic Mucosa	Colon
25	chr6:109658600-109670600	Weak transcription	Stomach Smooth Muscle	stomach
26	chr6:109658800-109660400	Weak transcription	Pancreas	Pancrea
27	chr6:109658800-109660400	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr6:109658800-109660800	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr6:109658800-109661000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr6:109658800-109661000	Weak transcription	Fetal Muscle Trunk	muscle
31	chr6:109658800-109662000	Weak transcription	Adipose Nuclei	Adipose
32	chr6:109658800-109663600	Weak transcription	Gastric	stomach
33	chr6:109658800-109663600	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr6:109658800-109670600	Weak transcription	Right Atrium	heart
35	chr6:109658800-109677000	Weak transcription	Fetal Stomach	stomach
36	chr6:109659000-109661400	Weak transcription	Stomach Mucosa	stomach
37	chr6:109659400-109661200	Enhancers	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links