Variant report

Variant	rs9791268
Chromosome Location	chr6:109611164-109611165
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr6:109611060-109611210	HepG2	liver:	n/a	n/a
2	RAD21	chr6:109611156-109611605	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:109610868..109612861-chr6:109702210..109704800,2	K562	blood:
2	chr6:109609752..109611411-chr6:109702208..109704618,2	MCF-7	breast:

Variant related genes	Relation type
CCDC162P	TF binding region
ENSG00000260273	Chromatin interaction
ENSG00000135535	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10457191	1.00[CEU][hapmap]
rs1048197	1.00[CEU][hapmap]
rs11964178	0.81[YRI][hapmap]
rs12200776	1.00[CEU][hapmap]
rs12204742	1.00[CEU][hapmap]
rs12208474	1.00[CEU][hapmap]
rs12211964	1.00[CEU][hapmap]
rs55924095	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57291120	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57826568	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58050355	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59367188	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59588025	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60819933	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61692511	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6919423	0.81[YRI][hapmap]
rs73762690	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73762691	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73762693	0.88[AFR][1000 genomes]
rs73762696	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73762697	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7764993	0.88[EUR][1000 genomes]
rs882073	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9374068	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9487057	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9487060	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109587600-109614600	Weak transcription	HepG2	liver
2	chr6:109591600-109615200	Weak transcription	Placenta	Placenta
3	chr6:109606200-109614400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:109608200-109612800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr6:109608200-109613200	Weak transcription	Brain Substantia Nigra	brain
6	chr6:109608400-109613200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr6:109608400-109613400	Weak transcription	Fetal Intestine Small	intestine
8	chr6:109609800-109613200	Weak transcription	K562	blood
9	chr6:109610200-109612800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:109611000-109611200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr6:109611000-109611200	Enhancers	Esophagus	oesophagus
12	chr6:109611000-109611200	Enhancers	Gastric	stomach
13	chr6:109611000-109611600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr6:109611000-109611600	ZNF genes & repeats	Spleen	Spleen
15	chr6:109611000-109613200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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