Variant report

Variant	rs882073
Chromosome Location	chr6:109611758-109611759
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:109611718-109611768	BE2_C	brain:	n/a
2	chr6:109611718-109611768	CMK	blood:	n/a
3	chr6:109611718-109611768	GM19239	blood:	n/a
4	chr6:109611718-109611768	ovcar-3	ovarian:	n/a
5	chr6:109611718-109611768	HEK293	kidney:	embryo
6	chr6:109611718-109611768	SKMC	muscle:	n/a
7	chr6:109611718-109611768	AoSMC	blood vessel:	n/a
8	chr6:109611718-109611768	SK-N-SH_RA	brain:	n/a
9	chr6:109611718-109611768	ECC-1	luminal epithelium:	n/a
10	chr6:109611718-109611768	MCF10A-Er-Src	breast:	n/a
11	chr6:109611718-109611768	HIPEpiC	eye:	n/a
12	chr6:109611718-109611768	AG04450	lung:	fetal
13	chr6:109611718-109611768	Jurkat	blood:	n/a
14	chr6:109611718-109611768	HRE	kidney:	n/a
15	chr6:109611718-109611768	U87	brain:	n/a
16	chr6:109611718-109611768	HMEC	breast:	n/a
17	chr6:109611718-109611768	AG04449	skin:	fetal
18	chr6:109611718-109611768	HCT-116	colon:	n/a
19	chr6:109611718-109611768	HUVEC	blood vessel:	n/a
20	chr6:109611718-109611768	HCM	heart:	n/a
21	chr6:109611718-109611768	HRCEpiC	kidney:	n/a
22	chr6:109611718-109611768	HNPCEpiC	eye:	n/a
23	chr6:109611718-109611768	LNCaP	prostate:	n/a
24	chr6:109611718-109611768	GM12892	blood:	n/a
25	chr6:109611718-109611768	RPTEC	kidney:	n/a
26	chr6:109611718-109611768	SK-N-MC	brain:	n/a
27	chr6:109611718-109611768	HEEpiC	esophagus:	n/a
28	chr6:109611718-109611768	BJ	skin:	n/a
29	chr6:109611718-109611768	T-47D	breast:	n/a
30	chr6:109611718-109611768	HepG2	liver:	n/a
31	chr6:109611718-109611768	ProgFib	skin:	n/a
32	chr6:109611718-109611768	IMR90	lung:	fetal
33	chr6:109611718-109611768	HCF	heart:	n/a
34	chr6:109611718-109611768	K562	blood:	n/a
35	chr6:109611718-109611768	AG10803	skin:	n/a
36	chr6:109611718-109611768	PrEC	prostate:	n/a
37	chr6:109611718-109611768	SK-N-SH	brain:	n/a
38	chr6:109611718-109611768	HCPEpiC	choroid plexus:	n/a
39	chr6:109611718-109611768	HL-60	blood:	n/a
40	chr6:109611718-109611768	GM06990	blood:	n/a
41	chr6:109611718-109611768	AG09309	skin:	n/a
42	chr6:109611718-109611768	MCF-7	breast:	n/a
43	chr6:109611718-109611768	GM12891	blood:	n/a
44	chr6:109611718-109611768	SAEC	small airway:	n/a
45	chr6:109611718-109611768	Hela-S3	cervix:	n/a
46	chr6:109611718-109611768	NHBE	bronchial:	n/a
47	chr6:109611718-109611768	HRPEpiC	eye:	n/a
48	chr6:109611718-109611768	HAEpiC	amniotic membrane:	n/a
49	chr6:109611718-109611768	A549	lung:	n/a
50	chr6:109611718-109611768	AG09319	gingival:	n/a

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:109610868..109612861-chr6:109702210..109704800,2	K562	blood:

No data

Variant related genes	Relation type
PTCHD3P3	CpG island
CCDC162P	CpG island
ENSG00000135535	Chromatin interaction
ENSG00000260273	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs55924095	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57291120	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57826568	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58050355	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59367188	0.84[EUR][1000 genomes]
rs59588025	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60819933	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61692511	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73762690	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73762691	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73762696	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73762697	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7764993	0.80[EUR][1000 genomes]
rs9374068	0.80[EUR][1000 genomes]
rs9487057	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9487060	0.91[ASN][1000 genomes]
rs9791268	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109587600-109614600	Weak transcription	HepG2	liver
2	chr6:109591600-109615200	Weak transcription	Placenta	Placenta
3	chr6:109606200-109614400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:109608200-109612800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr6:109608200-109613200	Weak transcription	Brain Substantia Nigra	brain
6	chr6:109608400-109613200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr6:109608400-109613400	Weak transcription	Fetal Intestine Small	intestine
8	chr6:109609800-109613200	Weak transcription	K562	blood
9	chr6:109610200-109612800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:109611000-109613200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:109611200-109612000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:109611200-109615200	Weak transcription	Esophagus	oesophagus
13	chr6:109611200-109618200	Weak transcription	Gastric	stomach
14	chr6:109611600-109611800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:109611600-109613000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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