Variant report

Variant	rs57826568
Chromosome Location	chr6:109631260-109631261
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109630848..109632942-chr6:109701333..109705023,3	MCF-7	breast:
2	chr6:109628891..109631970-chr6:109702157..109703919,3	K562	blood:
3	chr6:109625539..109627045-chr6:109630480..109632036,2	K562	blood:
4	chr6:109624351..109631970-chr6:109702157..109706422,11	K562	blood:
5	chr6:109508798..109509659-chr6:109630971..109631761,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135535	Chromatin interaction
ENSG00000201023	Chromatin interaction
ENSG00000260273	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs55924095	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57291120	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58050355	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59367188	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59588025	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60819933	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61692511	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73762690	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73762691	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73762693	0.84[AFR][1000 genomes]
rs73762696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73762697	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7764993	0.87[EUR][1000 genomes]
rs882073	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9374068	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9487057	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9487060	0.94[ASN][1000 genomes]
rs9791268	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527719	chr6:109624937-109631609	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109619400-109638000	Weak transcription	HepG2	liver
2	chr6:109621600-109634000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr6:109625800-109634200	Weak transcription	Fetal Muscle Leg	muscle
4	chr6:109626200-109631800	Weak transcription	Placenta	Placenta
5	chr6:109626200-109634200	Weak transcription	Psoas Muscle	Psoas
6	chr6:109626200-109638800	Weak transcription	Thymus	Thymus
7	chr6:109627600-109639000	Weak transcription	Left Ventricle	heart
8	chr6:109629600-109634000	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr6:109629600-109639800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:109629600-109654000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:109630000-109632400	Weak transcription	NHDF-Ad	bronchial
12	chr6:109630200-109634400	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr6:109630600-109632000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:109630600-109632600	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr6:109630800-109631600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:109630800-109636200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr6:109630800-109636200	Weak transcription	Fetal Intestine Large	intestine
18	chr6:109631000-109636200	Weak transcription	Fetal Intestine Small	intestine
19	chr6:109631200-109631600	Enhancers	K562	blood
20	chr6:109631200-109633600	Weak transcription	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links