Variant report

Variant	rs73762693
Chromosome Location	chr6:109618338-109618339
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:109616158..109619267-chr6:109664026..109668209,4	MCF-7	breast:
2	chr6:109604174..109607113-chr6:109618128..109619634,2	MCF-7	breast:
3	chr6:109616179..109618619-chr6:109761422..109762940,2	K562	blood:
4	chr6:109561591..109563297-chr6:109615936..109618604,2	K562	blood:
5	chr6:109541416..109543560-chr6:109616012..109618470,2	MCF-7	breast:
6	chr6:109618104..109620663-chr6:109710406..109712166,2	MCF-7	breast:
7	chr6:109574650..109576524-chr6:109616108..109618484,2	MCF-7	breast:
8	chr6:109607848..109610132-chr6:109616518..109618526,2	MCF-7	breast:
9	chr6:109609293..109611431-chr6:109617491..109619119,2	MCF-7	breast:
10	chr6:109617424..109619147-chr6:109701372..109704187,2	MCF-7	breast:
11	chr6:109617393..109622773-chr6:109623823..109627648,7	K562	blood:
12	chr6:109505984..109508437-chr6:109617883..109620389,2	MCF-7	breast:
13	chr6:109617102..109620529-chr6:109701283..109704576,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000201023	Chromatin interaction
ENSG00000260273	Chromatin interaction
ENSG00000203799	Chromatin interaction
ENSG00000135587	Chromatin interaction
ENSG00000135535	Chromatin interaction
ENSG00000185250	Chromatin interaction
ENSG00000233908	Chromatin interaction

rs_ID	r²[population]
rs1582186	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55646265	0.92[ASN][1000 genomes]
rs55924095	0.86[AFR][1000 genomes]
rs57291120	0.86[AFR][1000 genomes]
rs57826568	0.84[AFR][1000 genomes]
rs58050355	0.82[AFR][1000 genomes]
rs59588025	0.87[AFR][1000 genomes]
rs61692511	0.84[AFR][1000 genomes]
rs6928327	0.88[EUR][1000 genomes]
rs73762659	1.00[EUR][1000 genomes]
rs73762660	1.00[EUR][1000 genomes]
rs73762661	0.94[EUR][1000 genomes]
rs73762690	0.85[AFR][1000 genomes]
rs73762696	0.84[AFR][1000 genomes]
rs73762697	0.84[AFR][1000 genomes]
rs9791268	0.88[AFR][1000 genomes]

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109613000-109619000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr6:109613200-109619000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:109613400-109620200	Weak transcription	Right Atrium	heart
4	chr6:109613600-109620600	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr6:109614000-109618400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:109614000-109618600	Weak transcription	Brain Angular Gyrus	brain
7	chr6:109614000-109619000	Weak transcription	Brain Substantia Nigra	brain
8	chr6:109614000-109622000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:109614200-109618400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr6:109614200-109619000	Weak transcription	Brain Hippocampus Middle	brain
11	chr6:109614400-109621000	Enhancers	Primary hematopoietic stem cells	blood
12	chr6:109614600-109619400	Enhancers	HepG2	liver
13	chr6:109614800-109624400	Enhancers	K562	blood
14	chr6:109615000-109619600	Enhancers	Fetal Intestine Large	intestine
15	chr6:109615200-109619400	Enhancers	Stomach Mucosa	stomach
16	chr6:109615200-109619800	Enhancers	Fetal Intestine Small	intestine
17	chr6:109615400-109618400	Weak transcription	Small Intestine	intestine
18	chr6:109615400-109624600	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr6:109615600-109618400	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr6:109615600-109618400	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr6:109615600-109619000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr6:109615600-109619200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr6:109615600-109619200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr6:109615600-109619400	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr6:109615600-109622200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr6:109615600-109622600	Weak transcription	Left Ventricle	heart
27	chr6:109615600-109622600	Weak transcription	Right Ventricle	heart
28	chr6:109615800-109618400	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr6:109615800-109619200	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr6:109615800-109619200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr6:109615800-109620200	Weak transcription	Psoas Muscle	Psoas
32	chr6:109616200-109624400	Weak transcription	Hela-S3	cervix
33	chr6:109617200-109619600	Enhancers	Rectal Mucosa Donor 29	rectum
34	chr6:109617200-109619600	Enhancers	Rectal Mucosa Donor 31	rectum
35	chr6:109617400-109619200	Enhancers	Stomach Smooth Muscle	stomach
36	chr6:109617400-109619400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr6:109617400-109620400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr6:109617600-109618800	Enhancers	Pancreas	Pancrea
39	chr6:109617600-109619400	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr6:109617800-109618400	Enhancers	Fetal Thymus	thymus
41	chr6:109617800-109618600	Enhancers	Lung	lung
42	chr6:109617800-109618800	Enhancers	Duodenum Mucosa	Duodenum
43	chr6:109617800-109619200	Enhancers	Colonic Mucosa	Colon
44	chr6:109617800-109619400	Enhancers	Skeletal Muscle Female	skeletal muscle
45	chr6:109617800-109621800	Enhancers	Fetal Lung	lung
46	chr6:109617800-109623200	Enhancers	Fetal Muscle Leg	muscle
47	chr6:109618000-109618600	Enhancers	Aorta	Aorta
48	chr6:109618000-109618600	Enhancers	Placenta	Placenta
49	chr6:109618000-109618600	Enhancers	Fetal Stomach	stomach
50	chr6:109618000-109619600	Enhancers	Fetal Heart	heart

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