Variant report

Variant rs55646265
Chromosome Location chr6:109639246-109639247
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:45 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:109629600-109639800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr6:109629600-109654000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
3 chr6:109634200-109641200 Enhancers Fetal Muscle Leg muscle
4 chr6:109634400-109644000 Weak transcription Spleen Spleen
5 chr6:109635200-109639800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
6 chr6:109635200-109639800 Enhancers Brain Cingulate Gyrus brain
7 chr6:109635200-109641200 Enhancers Brain Hippocampus Middle brain
8 chr6:109635600-109639400 Weak transcription K562 blood
9 chr6:109635600-109646600 Weak transcription HSMMtube muscle
10 chr6:109636200-109641800 Enhancers Fetal Intestine Large intestine
11 chr6:109636200-109642000 Enhancers Fetal Intestine Small intestine
12 chr6:109636400-109641200 Enhancers Brain Inferior Temporal Lobe brain
13 chr6:109636800-109639400 Enhancers Brain Anterior Caudate brain
14 chr6:109637000-109640200 Weak transcription Fetal Kidney kidney
15 chr6:109637400-109639600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
16 chr6:109637400-109649800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
17 chr6:109637800-109640600 Enhancers Liver Liver
18 chr6:109637800-109640600 Enhancers Brain Angular Gyrus brain
19 chr6:109637800-109640800 Enhancers Fetal Thymus thymus
20 chr6:109638000-109639800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
21 chr6:109638000-109640800 Enhancers Brain Substantia Nigra brain
22 chr6:109638200-109644000 Enhancers Primary hematopoietic stem cells short term culture blood
23 chr6:109638400-109639800 Enhancers Rectal Mucosa Donor 29 rectum
24 chr6:109638400-109640600 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
25 chr6:109638400-109641800 Enhancers Stomach Mucosa stomach
26 chr6:109638400-109645400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
27 chr6:109638600-109640600 Enhancers Sigmoid Colon Sigmoid Colon
28 chr6:109638800-109640800 Enhancers Fetal Muscle Trunk muscle
29 chr6:109638800-109641000 Enhancers Thymus Thymus
30 chr6:109639000-109639400 Flanking Active TSS Colonic Mucosa Colon
31 chr6:109639000-109639400 Flanking Active TSS Duodenum Mucosa Duodenum
32 chr6:109639000-109639400 Enhancers Left Ventricle heart
33 chr6:109639000-109639400 Flanking Active TSS Rectal Mucosa Donor 31 rectum
34 chr6:109639000-109639600 Enhancers Stomach Smooth Muscle stomach
35 chr6:109639000-109640200 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
36 chr6:109639000-109640600 Enhancers Skeletal Muscle Female skeletal muscle
37 chr6:109639000-109640800 Enhancers Brain Dorsolateral Prefrontal Cortex brain
38 chr6:109639200-109639600 Weak transcription Psoas Muscle Psoas
39 chr6:109639200-109639600 Enhancers Skeletal Muscle Male skeletal muscle
40 chr6:109639200-109640000 Bivalent Enhancer Foreskin Melanocyte Primary Cells skin03 Skin
41 chr6:109639200-109640200 Weak transcription Small Intestine intestine
42 chr6:109639200-109640200 Flanking Active TSS HepG2 liver
43 chr6:109639200-109640400 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
44 chr6:109639200-109640600 Enhancers Pancreas Pancrea
45 chr6:109639200-109640800 Enhancers Primary hematopoietic stem cells blood

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