Variant report

Variant	rs61692511
Chromosome Location	chr6:109628558-109628559
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TBL1XR1	chr6:109628061-109628732	K562	blood:	n/a	n/a
2	EP300	chr6:109628104-109628752	K562	blood:	n/a	n/a
3	ZC3H11A	chr6:109628320-109628601	K562	blood:	n/a	n/a
4	RCOR1	chr6:109628071-109629737	K562	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:109627149..109629191-chr6:109642784..109645963,3	K562	blood:
2	chr6:109627945..109629933-chr6:109634086..109636945,2	MCF-7	breast:
3	chr6:109627149..109629191-chr6:109643019..109645963,3	K562	blood:
4	chr6:109555640..109560553-chr6:109624000..109628580,4	K562	blood:
5	chr6:109624351..109631970-chr6:109702157..109706422,11	K562	blood:
6	chr6:109626552..109629448-chr6:109691931..109694820,2	K562	blood:

No data

Variant related genes	Relation type
CCDC162P	TF binding region
ENSG00000260273	Chromatin interaction
ENSG00000243587	Chromatin interaction
ENSG00000135535	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs55924095	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57291120	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57826568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58050355	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59367188	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59588025	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60819933	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73762690	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73762691	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73762693	0.84[AFR][1000 genomes]
rs73762696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73762697	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7764993	0.87[EUR][1000 genomes]
rs882073	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9374068	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9487057	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9487060	0.94[ASN][1000 genomes]
rs9791268	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527719	chr6:109624937-109631609	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109619400-109629200	Weak transcription	Gastric	stomach
2	chr6:109619400-109638000	Weak transcription	HepG2	liver
3	chr6:109621400-109629600	Enhancers	Primary hematopoietic stem cells	blood
4	chr6:109621600-109634000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr6:109623600-109629400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:109624600-109631000	Enhancers	Fetal Intestine Small	intestine
7	chr6:109624800-109629000	Enhancers	Duodenum Mucosa	Duodenum
8	chr6:109625800-109629400	Weak transcription	HSMM	muscle
9	chr6:109625800-109634200	Weak transcription	Fetal Muscle Leg	muscle
10	chr6:109626000-109629000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:109626200-109628600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr6:109626200-109629200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr6:109626200-109629200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:109626200-109629200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr6:109626200-109629200	Weak transcription	Right Atrium	heart
16	chr6:109626200-109629400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr6:109626200-109629600	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr6:109626200-109631800	Weak transcription	Placenta	Placenta
19	chr6:109626200-109634200	Weak transcription	Psoas Muscle	Psoas
20	chr6:109626200-109638800	Weak transcription	Thymus	Thymus
21	chr6:109626400-109629200	Enhancers	K562	blood
22	chr6:109627000-109629200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:109627000-109629200	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr6:109627000-109630800	Enhancers	Fetal Intestine Large	intestine
25	chr6:109627200-109629200	Weak transcription	Adipose Nuclei	Adipose
26	chr6:109627200-109629200	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr6:109627400-109629200	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr6:109627600-109630800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr6:109627600-109639000	Weak transcription	Left Ventricle	heart
30	chr6:109628000-109628600	Enhancers	Small Intestine	intestine
31	chr6:109628000-109628800	Enhancers	Pancreas	Pancrea
32	chr6:109628000-109629200	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr6:109628000-109629600	Enhancers	Hela-S3	cervix
34	chr6:109628000-109630600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:109628200-109629200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr6:109628200-109629600	Enhancers	Aorta	Aorta
37	chr6:109628200-109629800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr6:109628400-109628800	Enhancers	Colonic Mucosa	Colon
39	chr6:109628400-109630000	Enhancers	Stomach Mucosa	stomach
40	chr6:109628400-109630000	Enhancers	NHDF-Ad	bronchial

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