Variant report

Variant	rs12192892
Chromosome Location	chr6:164213905-164213906
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10484519	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10945920	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12196115	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12198385	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12201999	0.84[AMR][1000 genomes]
rs12526720	0.84[AMR][1000 genomes]
rs12528228	0.84[AMR][1000 genomes]
rs12528265	0.84[AMR][1000 genomes]
rs17441835	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17538655	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2180044	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35444270	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6914507	0.80[AMR][1000 genomes]
rs6916412	0.84[AMR][1000 genomes]
rs7772799	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164210600-164214200	Weak transcription	K562	blood
2	chr6:164210600-164214400	Weak transcription	GM12878-XiMat	blood
3	chr6:164211600-164214200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:164211800-164214400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:164212000-164214200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:164212000-164214600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:164212000-164214800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr6:164212200-164214000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr6:164212200-164214200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:164212200-164214200	Weak transcription	HSMMtube	muscle
11	chr6:164212200-164214400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:164213400-164215400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:164213800-164214800	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr6:164213800-164215000	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr6:164213800-164215000	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr6:164213800-164215000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:164213800-164215200	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr6:164213800-164215400	Enhancers	HSMM	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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