Variant report

Variant	rs7772799
Chromosome Location	chr6:164196259-164196260
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10484519	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10945920	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12192892	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12196115	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12198385	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12201999	0.84[AMR][1000 genomes]
rs12526720	0.84[AMR][1000 genomes]
rs12528228	0.84[AMR][1000 genomes]
rs12528265	0.84[AMR][1000 genomes]
rs17441835	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17538655	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2180044	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35444270	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6914507	0.80[AMR][1000 genomes]
rs6916412	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164186000-164200600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:164186200-164203600	Weak transcription	Right Atrium	heart
3	chr6:164195000-164197000	Weak transcription	Fetal Heart	heart
4	chr6:164195200-164197400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr6:164195400-164198400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:164195600-164197400	Weak transcription	Left Ventricle	heart
7	chr6:164196200-164197400	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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