Variant report

Variant	rs12193617
Chromosome Location	chr6:56084038-56084039
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10484705	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs10484706	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs10484707	1.00[CEU][hapmap]
rs10484708	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs10807509	1.00[CEU][hapmap];0.87[YRI][hapmap]
rs12190240	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12193262	0.85[YRI][hapmap]
rs12195034	1.00[CEU][hapmap];0.87[YRI][hapmap]
rs12196208	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12196632	1.00[CEU][hapmap];0.87[YRI][hapmap]
rs12197715	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12198686	1.00[CEU][hapmap]
rs12201639	1.00[CEU][hapmap]
rs12202221	1.00[CEU][hapmap];0.87[YRI][hapmap]
rs12202885	1.00[CEU][hapmap]
rs12202972	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12204894	1.00[CEU][hapmap]
rs12207333	1.00[CEU][hapmap];0.88[YRI][hapmap]
rs12207447	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12207650	1.00[CEU][hapmap];0.87[YRI][hapmap]
rs12208804	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12214985	0.87[YRI][hapmap]
rs17221418	1.00[CEU][hapmap]
rs17222493	1.00[YRI][hapmap]
rs17821163	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs1925150	1.00[YRI][hapmap]
rs1925151	1.00[YRI][hapmap]
rs1925168	1.00[CEU][hapmap];0.85[YRI][hapmap]
rs1925183	1.00[CEU][hapmap]
rs2764061	1.00[CEU][hapmap]
rs885631	1.00[YRI][hapmap]
rs990188	1.00[YRI][hapmap]
rs990189	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56064000-56090800	Weak transcription	Fetal Lung	lung
2	chr6:56080800-56084600	Weak transcription	A549	lung
3	chr6:56082200-56104800	Weak transcription	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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