Variant report

Variant	rs12193946
Chromosome Location	chr6:35163020-35163021
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35139023..35142448-chr6:35162991..35165848,3	MCF-7	breast:
2	chr6:35157511..35159757-chr6:35160633..35163459,2	K562	blood:
3	chr6:35118710..35120443-chr6:35162484..35164592,2	MCF-7	breast:
4	chr6:35146928..35151829-chr6:35162484..35168348,5	K562	blood:
5	chr6:34761569..34764046-chr6:35162032..35164160,2	K562	blood:
6	chr6:35148681..35155694-chr6:35156262..35164857,12	MCF-7	breast:
7	chr6:35132639..35135102-chr6:35162466..35164751,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12191777	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12197124	0.82[ASN][1000 genomes]
rs12203818	0.94[ASN][1000 genomes]
rs12216410	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs17609940	0.88[ASN][1000 genomes]
rs2077750	0.94[ASN][1000 genomes]
rs2104332	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3428128	chr6:35150524-35225843	Bivalent Enhancer Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35154000-35169800	Weak transcription	Right Atrium	heart
2	chr6:35154200-35163400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:35154400-35169200	Weak transcription	Fetal Heart	heart
4	chr6:35158600-35167200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:35159400-35164800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:35159800-35163200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:35160400-35164800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:35160800-35163200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr6:35160800-35163800	Enhancers	K562	blood
10	chr6:35161000-35167800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:35161400-35163400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:35161400-35164800	Weak transcription	HMEC	breast
13	chr6:35161600-35167800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:35161600-35169400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:35161600-35170000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr6:35162000-35163200	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr6:35162000-35164800	Enhancers	Osteobl	bone
18	chr6:35162200-35163200	Enhancers	Muscle Satellite Cultured Cells	--
19	chr6:35163000-35163600	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr6:35163000-35163600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr6:35163000-35164800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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