Variant report

Variant	rs2077750
Chromosome Location	chr6:35089811-35089812
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10456429	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12154140	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12154189	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12191777	0.94[ASN][1000 genomes]
rs12193946	0.94[ASN][1000 genomes]
rs12197124	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12202483	0.84[CEU][hapmap];1.00[JPT][hapmap]
rs12203818	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];1.00[ASN][1000 genomes]
rs12204265	0.84[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.81[TSI][hapmap]
rs12205331	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12206298	0.84[CEU][hapmap];1.00[JPT][hapmap]
rs12216410	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17511835	1.00[MKK][hapmap]
rs17609940	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2104332	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];0.87[ASN][1000 genomes]
rs4276486	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62402708	0.87[AMR][1000 genomes]
rs7742443	1.00[JPT][hapmap];0.83[AMR][1000 genomes]
rs820082	0.94[CEU][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2077750	ANKS1A	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35089000-35092000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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