Variant report

Variant	rs62402708
Chromosome Location	chr6:35003153-35003154
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35002561..35006786-chr6:35010332..35014287,4	K562	blood:
2	chr6:34998385..35000765-chr6:35002872..35004521,2	MCF-7	breast:
3	chr6:35002495..35005140-chr6:35015377..35017563,2	K562	blood:
4	chr6:34994556..34998578-chr6:34998827..35004744,6	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10456428	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10456429	0.80[EUR][1000 genomes]
rs12154140	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12154189	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12197124	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12202483	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12204265	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12206298	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17609940	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2077750	0.87[AMR][1000 genomes]
rs2091074	0.90[EUR][1000 genomes]
rs4276486	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7742443	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs820082	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34939400-35016000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr6:34963600-35006600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr6:34986200-35015000	Weak transcription	Primary B cells from peripheral blood	blood
4	chr6:34986400-35011800	Weak transcription	Dnd41	blood
5	chr6:34986800-35014800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr6:34987000-35009000	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr6:34987000-35015800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr6:34987400-35015800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr6:34992800-35011800	Weak transcription	Brain Germinal Matrix	brain
10	chr6:34993800-35006000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:34993800-35014600	Weak transcription	Fetal Brain Male	brain
12	chr6:34994200-35004000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:34994200-35014400	Weak transcription	NHLF	lung
14	chr6:34994400-35003200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr6:34994400-35005400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr6:34994600-35036000	Weak transcription	K562	blood
17	chr6:34995000-35005600	Weak transcription	Osteobl	bone
18	chr6:34995000-35005800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:34995000-35013800	Weak transcription	Hela-S3	cervix
20	chr6:34995200-35003400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:34995600-35003800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr6:34996000-35015200	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr6:34996200-35005400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr6:34996200-35010000	Weak transcription	Ovary	ovary
25	chr6:34996800-35003400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr6:34997800-35004800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr6:34998600-35008000	Weak transcription	Brain Angular Gyrus	brain
28	chr6:34998800-35004400	Enhancers	Sigmoid Colon	Sigmoid Colon
29	chr6:34999000-35005600	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr6:34999000-35008600	Weak transcription	Primary B cells from cord blood	blood
31	chr6:34999200-35003400	Weak transcription	Brain Hippocampus Middle	brain
32	chr6:34999400-35007400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr6:34999800-35005000	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr6:34999800-35007400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr6:34999800-35014600	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr6:35000200-35003800	Enhancers	Fetal Heart	heart
37	chr6:35000200-35003800	Weak transcription	Fetal Kidney	kidney
38	chr6:35000200-35004800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr6:35000200-35005600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr6:35000600-35008200	Weak transcription	HepG2	liver
41	chr6:35001000-35004600	Enhancers	Brain Anterior Caudate	brain
42	chr6:35001000-35005600	Genic enhancers	HSMMtube	muscle
43	chr6:35001000-35005800	Enhancers	Aorta	Aorta
44	chr6:35001400-35004200	Genic enhancers	Left Ventricle	heart
45	chr6:35001400-35004200	Enhancers	Rectal Mucosa Donor 31	rectum
46	chr6:35001400-35005800	Enhancers	Right Ventricle	heart
47	chr6:35001600-35003800	Enhancers	Gastric	stomach
48	chr6:35001600-35004400	Enhancers	Stomach Mucosa	stomach
49	chr6:35001600-35004400	Enhancers	HUVEC	blood vessel
50	chr6:35001600-35004600	Enhancers	Primary monocytes fromperipheralblood	blood

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