Variant report

Variant	rs2091074
Chromosome Location	chr6:35006409-35006410
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35002561..35006786-chr6:35010332..35014287,4	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10456428	0.90[EUR][1000 genomes]
rs12154140	0.81[EUR][1000 genomes]
rs12154189	0.81[EUR][1000 genomes]
rs12197124	0.86[EUR][1000 genomes]
rs12202483	0.90[EUR][1000 genomes]
rs12204265	0.90[EUR][1000 genomes]
rs12206298	0.90[EUR][1000 genomes]
rs17609940	0.86[EUR][1000 genomes]
rs62402708	0.90[EUR][1000 genomes]
rs7742443	0.90[EUR][1000 genomes]
rs820082	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34939400-35016000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr6:34963600-35006600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr6:34986200-35015000	Weak transcription	Primary B cells from peripheral blood	blood
4	chr6:34986400-35011800	Weak transcription	Dnd41	blood
5	chr6:34986800-35014800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr6:34987000-35009000	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr6:34987000-35015800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr6:34987400-35015800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr6:34992800-35011800	Weak transcription	Brain Germinal Matrix	brain
10	chr6:34993800-35014600	Weak transcription	Fetal Brain Male	brain
11	chr6:34994200-35014400	Weak transcription	NHLF	lung
12	chr6:34994600-35036000	Weak transcription	K562	blood
13	chr6:34995000-35013800	Weak transcription	Hela-S3	cervix
14	chr6:34996000-35015200	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr6:34996200-35010000	Weak transcription	Ovary	ovary
16	chr6:34998600-35008000	Weak transcription	Brain Angular Gyrus	brain
17	chr6:34999000-35008600	Weak transcription	Primary B cells from cord blood	blood
18	chr6:34999400-35007400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr6:34999800-35007400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr6:34999800-35014600	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr6:35000600-35008200	Weak transcription	HepG2	liver
22	chr6:35003000-35006800	Enhancers	Rectal Smooth Muscle	rectum
23	chr6:35003000-35008400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:35003200-35006600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr6:35003200-35012000	Weak transcription	Thymus	Thymus
26	chr6:35003600-35010400	Weak transcription	Pancreas	Pancrea
27	chr6:35003800-35007800	Weak transcription	Brain Hippocampus Middle	brain
28	chr6:35003800-35010400	Weak transcription	Gastric	stomach
29	chr6:35003800-35012000	Strong transcription	Fetal Intestine Small	intestine
30	chr6:35003800-35014600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr6:35004000-35009400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr6:35004000-35010400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr6:35004000-35010400	Weak transcription	Esophagus	oesophagus
34	chr6:35004000-35012200	Weak transcription	Fetal Thymus	thymus
35	chr6:35004200-35007400	Weak transcription	Fetal Muscle Trunk	muscle
36	chr6:35004200-35010200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr6:35004200-35010200	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr6:35004200-35010400	Weak transcription	Colonic Mucosa	Colon
39	chr6:35004200-35011800	Weak transcription	Fetal Kidney	kidney
40	chr6:35004200-35011800	Weak transcription	HMEC	breast
41	chr6:35004200-35012800	Weak transcription	Small Intestine	intestine
42	chr6:35004400-35007400	Weak transcription	Monocytes-CD14+_RO01746	blood
43	chr6:35004400-35007600	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr6:35004400-35009400	Weak transcription	HUVEC	blood vessel
45	chr6:35004400-35010600	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr6:35004400-35011000	Weak transcription	Stomach Mucosa	stomach
47	chr6:35004600-35007600	Weak transcription	Liver	Liver
48	chr6:35004600-35008000	Weak transcription	Primary monocytes fromperipheralblood	blood
49	chr6:35004800-35007800	Weak transcription	Adipose Nuclei	Adipose
50	chr6:35004800-35007800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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